Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H7795_RS01440 Genome accession   NZ_CP060641
Coordinates   267656..268579 (+) Length   307 a.a.
NCBI ID   WP_002986000.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY210     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 262656..273579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7795_RS01425 (H7795_01415) amiC 264156..265658 (+) 1503 WP_115255813.1 ABC transporter permease Regulator
  H7795_RS01430 (H7795_01420) amiD 265658..266584 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  H7795_RS01435 (H7795_01425) amiE 266593..267663 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  H7795_RS01440 (H7795_01430) amiF 267656..268579 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  H7795_RS09270 (H7795_01435) - 268617..268700 (-) 84 Protein_235 IS3 family transposase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34715.90 Da        Isoelectric Point: 6.5113

>NTDB_id=477084 H7795_RS01440 WP_002986000.1 267656..268579(+) (amiF) [Streptococcus pyogenes strain TSPY210]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYHPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=477084 H7795_RS01440 WP_002986000.1 267656..268579(+) (amiF) [Streptococcus pyogenes strain TSPY210]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAATCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGTTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAATCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGAGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCACATGAATTTTCAGGAGGTCAACGTCAGCGGATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAACCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTTTTAAACCTTCTCAAACGGATGCAAGCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCCTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAACGTCAAAAAGAACT
TGTTGTCTATCATCCAGACCAGCATGATTATACATTAGATAAGCCATCGATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.353

99.674

0.821
  amiF Streptococcus thermophilus LMD-9

82.026

99.674

0.818
  amiF Streptococcus salivarius strain HSISS4

82.026

99.674

0.818