Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   J1F19_RS13170 Genome accession   NZ_CP071439
Coordinates   2773010..2773600 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain EcPNK004     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2768010..2778600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F19_RS13155 (J1F19_13155) uhpT 2768532..2769923 (-) 1392 WP_000879199.1 hexose-6-phosphate:phosphate antiporter -
  J1F19_RS13160 (J1F19_13160) uhpC 2770179..2771498 (-) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  J1F19_RS13165 (J1F19_13165) uhpB 2771508..2773010 (-) 1503 WP_001586453.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  J1F19_RS13170 (J1F19_13170) letA 2773010..2773600 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  J1F19_RS13175 (J1F19_13175) - 2773762..2775231 (-) 1470 WP_001309856.1 hypothetical protein -
  J1F19_RS13180 (J1F19_13180) - 2775507..2775989 (-) 483 WP_038428612.1 hypothetical protein -
  J1F19_RS13185 (J1F19_13185) ilvN 2777067..2777357 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=476929 J1F19_RS13170 WP_000633668.1 2773010..2773600(-) (letA) [Escherichia coli strain EcPNK004]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=476929 J1F19_RS13170 WP_000633668.1 2773010..2773600(-) (letA) [Escherichia coli strain EcPNK004]
ATGATCACCGTTGCACTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGTCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTGATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378