Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H9Q80_RS01385 Genome accession   NZ_CP060636
Coordinates   283625..284098 (-) Length   157 a.a.
NCBI ID   WP_117454281.1    Uniprot ID   -
Organism   [Eubacterium] hominis strain New-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 278625..289098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q80_RS01360 (H9Q80_01360) dnaB 278650..279990 (-) 1341 WP_117454276.1 replicative DNA helicase -
  H9Q80_RS01365 (H9Q80_01365) rplI 280000..280446 (-) 447 WP_117454277.1 50S ribosomal protein L9 -
  H9Q80_RS01370 (H9Q80_01370) - 280424..282415 (-) 1992 WP_117454278.1 DHH family phosphoesterase -
  H9Q80_RS01375 (H9Q80_01375) - 282393..283316 (-) 924 WP_117536282.1 DUF2232 domain-containing protein -
  H9Q80_RS01380 (H9Q80_01380) rpsR 283377..283607 (-) 231 WP_117454280.1 30S ribosomal protein S18 -
  H9Q80_RS01385 (H9Q80_01385) ssbA 283625..284098 (-) 474 WP_117454281.1 single-stranded DNA-binding protein Machinery gene
  H9Q80_RS01390 (H9Q80_01390) rpsF 284124..284417 (-) 294 WP_117454282.1 30S ribosomal protein S6 -
  H9Q80_RS01395 (H9Q80_01395) - 284563..286125 (-) 1563 WP_117536283.1 AAA family ATPase -
  H9Q80_RS01400 (H9Q80_01400) - 286243..287412 (-) 1170 WP_117536284.1 hypothetical protein -
  H9Q80_RS01405 (H9Q80_01405) - 287436..288161 (-) 726 WP_117536285.1 SWIM zinc finger family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17031.79 Da        Isoelectric Point: 4.6957

>NTDB_id=476887 H9Q80_RS01385 WP_117454281.1 283625..284098(-) (ssbA) [[Eubacterium] hominis strain New-5]
MINRVVLVGRLTKDPILRKTGSGASVVSFTVACDRRIKTEGQPTADFINCVAWNKVADLMAQYLHKGSLVGVEGRIQTRS
YDDQTGKRVYVTEVVADSVQFLESKSASANNAQAGYTPDYNANNQGYEPDTSSSQSSYSSDFASSDTLDIASDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=476887 H9Q80_RS01385 WP_117454281.1 283625..284098(-) (ssbA) [[Eubacterium] hominis strain New-5]
ATGATCAATCGTGTCGTTTTGGTTGGACGTCTTACAAAAGACCCAATCTTAAGAAAAACCGGCTCAGGAGCATCTGTGGT
ATCCTTTACCGTTGCATGTGATCGCCGTATAAAAACCGAAGGTCAGCCAACAGCCGATTTTATCAATTGCGTAGCATGGA
ATAAAGTTGCTGATTTAATGGCACAATACCTTCATAAAGGAAGTCTAGTTGGAGTGGAAGGAAGAATCCAGACACGCAGC
TATGATGACCAGACAGGAAAACGTGTATATGTTACTGAAGTAGTTGCTGACAGCGTACAGTTTCTGGAAAGCAAATCTGC
AAGTGCAAACAATGCACAAGCTGGATATACACCTGATTACAATGCAAACAACCAGGGTTATGAACCAGATACATCAAGTT
CACAGTCATCTTATTCCAGTGATTTTGCATCAAGCGATACACTTGATATCGCAAGTGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.198

100

0.51
  ssb Latilactobacillus sakei subsp. sakei 23K

44.571

100

0.497
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.516

0.376