Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   J0O73_RS14390 Genome accession   NZ_CP071375
Coordinates   2968480..2970312 (-) Length   610 a.a.
NCBI ID   WP_053884504.1    Uniprot ID   -
Organism   Escherichia coli strain E105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2963480..2975312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0O73_RS14345 (J0O73_14335) yecR 2963827..2964150 (+) 324 WP_001578509.1 YecR-like lipofamily protein -
  J0O73_RS14350 (J0O73_14340) ftnA 2964322..2964819 (+) 498 WP_000917208.1 non-heme ferritin -
  J0O73_RS14355 (J0O73_14345) yecH 2964857..2965096 (-) 240 WP_000377224.1 YecH family metal-binding protein -
  J0O73_RS14360 (J0O73_14350) tyrP 2965287..2966498 (+) 1212 WP_053884503.1 tyrosine transporter TyrP -
  J0O73_RS14365 (J0O73_14355) yecA 2966560..2967225 (-) 666 WP_000847882.1 UPF0149 family protein YecA -
  J0O73_RS14385 (J0O73_14375) pgsA 2967875..2968423 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J0O73_RS14390 (J0O73_14380) uvrC 2968480..2970312 (-) 1833 WP_053884504.1 excinuclease ABC subunit UvrC Machinery gene
  J0O73_RS14395 (J0O73_14385) letA 2970309..2970965 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  J0O73_RS27660 - 2971107..2971223 (+) 117 WP_001302039.1 hypothetical protein -
  J0O73_RS14400 (J0O73_14390) yecU 2971261..2971437 (+) 177 WP_000590344.1 protein YecU -
  J0O73_RS14405 (J0O73_14395) yecF 2971424..2971648 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  J0O73_RS14410 (J0O73_14400) sdiA 2971716..2972438 (-) 723 WP_053884505.1 transcriptional regulator SdiA -
  J0O73_RS14415 (J0O73_14405) tcyN 2972668..2973420 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  J0O73_RS14420 (J0O73_14410) tcyL 2973417..2974085 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  J0O73_RS14425 (J0O73_14415) dcyD 2974100..2975086 (-) 987 WP_001128214.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68214.11 Da        Isoelectric Point: 9.3685

>NTDB_id=476771 J0O73_RS14390 WP_053884504.1 2968480..2970312(-) (uvrC) [Escherichia coli strain E105]
MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLL
EHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT
EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLD
FNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDI
SHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA
ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLET
IEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWLLKH

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=476771 J0O73_RS14390 WP_053884504.1 2968480..2970312(-) (uvrC) [Escherichia coli strain E105]
GTGAGTGATCAGTTTGACGCAAAAGCGTTTTTAAAAACCGTAACCAGCCAGCCTGGCGTTTATCGCATGTACGATGCTGG
TGGTACGGTTATCTATGTCGGCAAAGCGAAAGACCTGAAAAAACGGCTTTCCAGCTATTTCCGTAGCAACCTCGCTTCGC
GCAAAACCGAAGCGCTGGTCGCCCAGATCCAGCAAATTGATGTAACGGTTACTCATACAGAAACCGAAGCGCTGTTGCTG
GAACACAACTACATCAAACTCTATCAGCCGCGTTACAACGTTTTACTACGCGATGATAAATCTTATCCCTTTATCTTCCT
GAGTGGCGATACCCATCCGCGTCTGGCGATGCATCGTGGTGCAAAGCATGCCAAAGGTGAATATTTCGGCCCGTTCCCGA
ATGGCTATGCCGTACGTGAAACACTGGCGCTACTGCAAAAGATTTTCCCCATTCGCCAGTGCGAAAATAGTGTTTATCGC
AATCGCTCGCGTCCGTGTCTGCAATATCAGATAGGGCGCTGTCTGGGACCGTGCGTTGAAGGACTGGTGAGTGAAGAAGA
ATACGCTCAGCAGGTCGAGTATGTGCGCCTGTTTTTGTCTGGCAAAGATGATCAGGTGCTTACGCAACTCATTAGTCGTA
TGGAAACTGCCAGCCAGAATCTGGAGTTTGAAGAAGCTGCACGTATTCGCGACCAAATTCAGGCGGTGCGACGCGTCACC
GAAAAACAATTCGTTTCCAATACCGGCGACGACCTCGACGTTATTGGTGTGGCGTTCGATGCGGGCATGGCTTGTGTCCA
CGTATTGTTCATTCGTCAGGGCAAAGTGCTCGGCAGCCGCAGCTATTTCCCGAAAGTGCCTGGCGGTACGGAACTGAGCG
AGGTGGTAGAAACCTTCGTAGGTCAGTTCTATTTACAAGGCAGCCAGATGCGCACCTTACCGGGTGAGATCCTGCTCGAT
TTTAATCTTAGCGATAAAACGCTGCTCGCCGATTCCCTTTCAGAACTGGCGGGACGCAAGATTAATGTTCAAACCAAACC
TCGTGGCGATAGAGCGCGTTATCTGAAACTCGCGCGCACCAATGCGGCGACGGCCTTAACCAGCAAACTTTCGCAGCAAT
CTACCGTTCACCAGCGGCTTACAGCACTTGCCAGCGTGTTGAAATTGCCGGAAGTGAAGCGGATGGAGTGCTTTGACATC
AGCCATACCATGGGTGAACAAACCGTCGCTTCCTGTGTGGTGTTTGATGCTAACGGCCCGCTGCGTGCGGAGTATCGGCG
CTATAACATTACTGGCATCACGCCGGGCGATGATTATGCGGCGATGAATCAGGTGCTGCGTCGGCGTTATGGTAAAGCCA
TCGACGACAGTAAGATCCCGGATGTGATACTTATCGACGGCGGCAAAGGCCAGCTTGCGCAGGCGAAAAATGTCTTCGCC
GAACTGGATGTCTCATGGGATAAAAATCATCCGCTGCTACTTGGCGTTGCCAAAGGAGCAGATCGTAAGGCTGGGCTGGA
AACGCTGTTCTTTGAGCCGGAAGGTGAGGGATTCAGTTTGCCGCCAGATTCTCCCGCGCTGCATGTTATCCAGCATATTC
GCGATGAATCACATGATCACGCGATTGGCGGGCACCGTAAAAAACGGGCGAAGGTCAAAAATACCAGTTCCCTGGAAACC
ATTGAAGGCGTCGGGCCAAAACGCCGGCAAATGTTGTTGAAATATATGGGCGGTTTGCAAGGTTTACGTAACGCCAGCGT
CGAGGAAATTGCAAAAGTGCCGGGTATTTCGCAAGGTCTGGCAGAAAAGATCTTCTGGTTGTTGAAACATTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)

Helix-hairpin-helix domain (HHH_5)

(558-604)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.891

99.508

0.377
  uvrC Streptococcus pneumoniae R6

37.562

99.508

0.374
  uvrC Streptococcus pneumoniae D39

37.562

99.508

0.374