Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H9L11_RS07545 Genome accession   NZ_CP060589
Coordinates   1597589..1598314 (-) Length   241 a.a.
NCBI ID   WP_033905914.1    Uniprot ID   -
Organism   Vibrio sp. sp1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592589..1603314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS07520 (H9L11_07520) - 1593722..1594213 (+) 492 WP_005383002.1 type II secretion system protein M -
  H9L11_RS07525 (H9L11_07525) - 1594215..1594976 (+) 762 WP_033905913.1 type II secretion system protein N -
  H9L11_RS07530 (H9L11_07530) cysQ 1595289..1596116 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  H9L11_RS07535 (H9L11_07535) nudE 1596161..1596730 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  H9L11_RS07540 (H9L11_07540) nfuA 1596907..1597491 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  H9L11_RS07545 (H9L11_07545) comF 1597589..1598314 (-) 726 WP_033905914.1 amidophosphoribosyltransferase Machinery gene
  H9L11_RS07550 (H9L11_07550) bioH 1598399..1599166 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  H9L11_RS07555 (H9L11_07555) - 1599291..1599755 (+) 465 WP_005379316.1 hypothetical protein -
  H9L11_RS07560 (H9L11_07560) - 1599860..1602181 (-) 2322 WP_205391078.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27823.08 Da        Isoelectric Point: 9.7698

>NTDB_id=476772 H9L11_RS07545 WP_033905914.1 1597589..1598314(-) (comF) [Vibrio sp. sp1]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVRLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=476772 H9L11_RS07545 WP_033905914.1 1597589..1598314(-) (comF) [Vibrio sp. sp1]
ATGTTATCTCATCACTGGCAAAACATCATGCACCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAGGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.954

100

0.71
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477