Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   H9L11_RS04960 Genome accession   NZ_CP060589
Coordinates   1055835..1056428 (-) Length   197 a.a.
NCBI ID   WP_033907305.1    Uniprot ID   A0AAW9B9Y8
Organism   Vibrio sp. sp1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1050835..1061428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS04940 (H9L11_04940) aroB 1051720..1052820 (-) 1101 WP_005381318.1 3-dehydroquinate synthase -
  H9L11_RS04945 (H9L11_04945) aroK 1052853..1053371 (-) 519 WP_005381319.1 shikimate kinase AroK -
  H9L11_RS04950 (H9L11_04950) pilQ 1053559..1055304 (-) 1746 WP_033907306.1 type IV pilus secretin PilQ family protein Machinery gene
  H9L11_RS04955 (H9L11_04955) pilP 1055330..1055845 (-) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  H9L11_RS04960 (H9L11_04960) pilO 1055835..1056428 (-) 594 WP_033907305.1 type 4a pilus biogenesis protein PilO Machinery gene
  H9L11_RS04965 (H9L11_04965) pilN 1056421..1056996 (-) 576 WP_005381323.1 PilN domain-containing protein Machinery gene
  H9L11_RS04970 (H9L11_04970) pilM 1056980..1057996 (-) 1017 WP_033907304.1 type IV pilus assembly protein PilM Machinery gene
  H9L11_RS04975 (H9L11_04975) - 1058141..1060702 (+) 2562 WP_033907303.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23001.51 Da        Isoelectric Point: 5.0948

>NTDB_id=476764 H9L11_RS04960 WP_033907305.1 1055835..1056428(-) (pilO) [Vibrio sp. sp1]
MVDWQDLEIDEMAEWPLLPQIVVIALLIMAIQGLGYWFYLKPKEEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=476764 H9L11_RS04960 WP_033907305.1 1055835..1056428(-) (pilO) [Vibrio sp. sp1]
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGCGCTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGAAGAACAGTTGAATCACTTGATCCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGTGAAACCCTGCACTTTCGGGTGCGCGCTAACACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(48-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

87.895

96.447

0.848
  pilO Vibrio cholerae strain A1552

70.681

96.954

0.685