Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H9L11_RS04965 Genome accession   NZ_CP060589
Coordinates   1056421..1056996 (-) Length   191 a.a.
NCBI ID   WP_005381323.1    Uniprot ID   A0AAW9BSJ2
Organism   Vibrio sp. sp1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1051421..1061996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS04940 (H9L11_04940) aroB 1051720..1052820 (-) 1101 WP_005381318.1 3-dehydroquinate synthase -
  H9L11_RS04945 (H9L11_04945) aroK 1052853..1053371 (-) 519 WP_005381319.1 shikimate kinase AroK -
  H9L11_RS04950 (H9L11_04950) pilQ 1053559..1055304 (-) 1746 WP_033907306.1 type IV pilus secretin PilQ family protein Machinery gene
  H9L11_RS04955 (H9L11_04955) pilP 1055330..1055845 (-) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  H9L11_RS04960 (H9L11_04960) pilO 1055835..1056428 (-) 594 WP_033907305.1 type 4a pilus biogenesis protein PilO Machinery gene
  H9L11_RS04965 (H9L11_04965) pilN 1056421..1056996 (-) 576 WP_005381323.1 PilN domain-containing protein Machinery gene
  H9L11_RS04970 (H9L11_04970) pilM 1056980..1057996 (-) 1017 WP_033907304.1 type IV pilus assembly protein PilM Machinery gene
  H9L11_RS04975 (H9L11_04975) - 1058141..1060702 (+) 2562 WP_033907303.1 PBP1A family penicillin-binding protein -
  H9L11_RS04980 (H9L11_04980) oxyR 1060756..1061667 (-) 912 WP_005381326.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22376.89 Da        Isoelectric Point: 7.4658

>NTDB_id=476765 H9L11_RS04965 WP_005381323.1 1056421..1056996(-) (pilN) [Vibrio sp. sp1]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=476765 H9L11_RS04965 WP_005381323.1 1056421..1056996(-) (pilN) [Vibrio sp. sp1]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAATCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGAGC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGTCTAAAGGTCGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCAGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

82.723

100

0.827
  pilN Vibrio cholerae strain A1552

63.277

92.67

0.586