Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   JZY07_RS08805 Genome accession   NZ_CP071305
Coordinates   1769975..1770625 (-) Length   216 a.a.
NCBI ID   WP_023371212.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1764975..1775625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS08780 (JZY07_08780) - 1765045..1765260 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  JZY07_RS08785 (JZY07_08785) xseA 1765235..1766578 (-) 1344 WP_024412071.1 exodeoxyribonuclease VII large subunit -
  JZY07_RS08790 (JZY07_08790) - 1766745..1767653 (+) 909 WP_024412072.1 neutral zinc metallopeptidase -
  JZY07_RS08795 (JZY07_08795) - 1767862..1768413 (-) 552 WP_024400287.1 isoprenylcysteine carboxyl methyltransferase family protein -
  JZY07_RS08800 (JZY07_08800) - 1768585..1769973 (-) 1389 WP_024393825.1 HAMP domain-containing sensor histidine kinase -
  JZY07_RS08805 (JZY07_08805) scnR 1769975..1770625 (-) 651 WP_023371212.1 response regulator transcription factor Regulator
  JZY07_RS08810 (JZY07_08810) - 1770857..1771558 (+) 702 WP_024382375.1 CPBP family intramembrane glutamic endopeptidase -
  JZY07_RS08815 (JZY07_08815) - 1772023..1775142 (-) 3120 WP_242513100.1 serum opacification factor -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24742.85 Da        Isoelectric Point: 4.7792

>NTDB_id=476710 JZY07_RS08805 WP_023371212.1 1769975..1770625(-) (scnR) [Streptococcus suis strain SC183]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=476710 JZY07_RS08805 WP_023371212.1 1769975..1770625(-) (scnR) [Streptococcus suis strain SC183]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATACGTAAAAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGATACTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

37.838

100

0.389
  micA Streptococcus pneumoniae Cp1015

36.889

100

0.384
  vicR Streptococcus mutans UA159

36.283

100

0.38