Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ATM22_RS03995 Genome accession   NZ_CP060528
Coordinates   860204..860920 (-) Length   238 a.a.
NCBI ID   WP_001829999.1    Uniprot ID   C0LF82
Organism   Staphylococcus epidermidis strain LM087     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 855204..865920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM22_RS03980 (ATM22_03950) - 856485..857438 (+) 954 WP_002494078.1 LacI family DNA-binding transcriptional regulator -
  ATM22_RS03985 (ATM22_03955) - 857698..859170 (+) 1473 WP_002494079.1 sucrose-6-phosphate hydrolase -
  ATM22_RS03990 (ATM22_03960) - 859177..860136 (+) 960 WP_002494080.1 carbohydrate kinase -
  ATM22_RS03995 (ATM22_03965) agrA 860204..860920 (-) 717 WP_001829999.1 quorum-sensing response regulator AgrA Regulator
  ATM22_RS04000 (ATM22_03970) agrC 860937..862226 (-) 1290 WP_002494081.1 quorum-sensing sensor histidine kinase AgrC -
  ATM22_RS04005 (ATM22_03975) agrD 862253..862393 (-) 141 WP_001830021.1 cyclic lactone autoinducer peptide AgrD -
  ATM22_RS04010 (ATM22_03980) - 862377..862961 (-) 585 WP_001830005.1 accessory gene regulator AgrB -
  ATM22_RS04015 hld 863278..863355 (+) 78 WP_002494082.1 delta-hemolysin -
  ATM22_RS04020 (ATM22_03985) - 863736..864521 (-) 786 WP_002494083.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27936.97 Da        Isoelectric Point: 5.6250

>NTDB_id=476596 ATM22_RS03995 WP_001829999.1 860204..860920(-) (agrA) [Staphylococcus epidermidis strain LM087]
MKIFVCEDDQRQREHMVSIIKNYIMIEEKPMELALATNDPYEVLEQSKELNDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKMRIIDCLETAHTRLKLLSKESNVDTIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVINRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=476596 ATM22_RS03995 WP_001829999.1 860204..860920(-) (agrA) [Staphylococcus epidermidis strain LM087]
ATGAAAATTTTTGTTTGTGAAGATGACCAAAGACAAAGAGAACATATGGTATCAATCATTAAAAACTACATAATGATTGA
AGAAAAGCCAATGGAGTTAGCCTTAGCAACAAATGATCCTTATGAGGTCTTAGAGCAATCAAAAGAACTTAATGACATTG
GTTGTTACTTCCTTGATATTCAATTAGAAGCTGATATGAACGGTATTAAATTAGCCAGTGAAATTCGTAAACATGATCCT
GTTGGTAATATTATATTTGTAACCAGTCACAGTGAACTGACTTATTTGACGTTTGTTTATAAAGTGGCTGCTATGGATTT
TATTTTTAAGGATGATCCATCTGAATTAAAAATGAGAATCATAGATTGTCTTGAAACAGCACATACACGACTCAAATTAT
TATCAAAAGAAAGTAATGTAGATACGATTGAGTTAAAGCGGGGAAGTAATTCAGTATACGTTCAATATGATGACATTATG
TTTTTTGAATCATCTACGAAATCTCATAGACTCATCGCACATCTTGATAATCGACAAATTGAATTTTATGGAAATTTAAA
GGAATTAGCACAGCTTGATGAACGATTCTTTAGATGTCATAACAGTTTTGTGATAAACAGGCATAATATTGAATCTATTG
ATTCAAAAGAACGTATTGTTTACTTTAAGAATGGCGAAAATTGTTTCGCTTCAGTACGTAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0LF82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878
  comE/comE2 Streptococcus gordonii strain NCTC7865

35.178

100

0.374
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

35.178

100

0.374