Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H8Z73_RS16690 Genome accession   NZ_CP060446
Coordinates   3869644..3871038 (+) Length   464 a.a.
NCBI ID   WP_005930970.1    Uniprot ID   A0A0U5FKR9
Organism   Xanthomonas citri pv. citri strain DAR72029     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3850115..3884237 3869644..3871038 within 0


Gene organization within MGE regions


Location: 3850115..3884237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8Z73_RS16620 (H8Z73_16625) avrXacE2 3850115..3851185 (-) 1071 WP_011052114.1 type III secretion system effector avirulence protein AvrXacE2 -
  H8Z73_RS16625 (H8Z73_16630) - 3851270..3852547 (-) 1278 WP_052462048.1 lytic murein transglycosylase -
  H8Z73_RS16630 (H8Z73_16635) - 3852681..3855671 (-) 2991 WP_015472512.1 Tn3 family transposase -
  H8Z73_RS16635 (H8Z73_16640) - 3855680..3856953 (-) 1274 Protein_3263 site-specific integrase -
  H8Z73_RS16640 (H8Z73_16645) - 3857147..3858244 (+) 1098 WP_088016277.1 DNA-binding protein -
  H8Z73_RS16645 (H8Z73_16650) xopE 3858378..3859454 (+) 1077 WP_041471283.1 XopE/AvrPphe family type III secretion system effector -
  H8Z73_RS16650 (H8Z73_16655) - 3859785..3860866 (+) 1082 Protein_3266 DNA-binding protein -
  H8Z73_RS16655 (H8Z73_16660) xopAI 3861000..3861890 (+) 891 WP_011052119.1 type III secretion system effector XopAI -
  H8Z73_RS16660 (H8Z73_16665) - 3863221..3863505 (+) 285 WP_016849322.1 hypothetical protein -
  H8Z73_RS16665 (H8Z73_16670) - 3863733..3864848 (+) 1116 WP_011052122.1 IS1595 family transposase -
  H8Z73_RS16670 (H8Z73_16675) - 3865136..3865285 (+) 150 WP_157380096.1 hypothetical protein -
  H8Z73_RS16675 (H8Z73_16680) sucD 3865405..3866280 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  H8Z73_RS16680 (H8Z73_16685) sucC 3866305..3867474 (-) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  H8Z73_RS16685 (H8Z73_16690) - 3867706..3869319 (+) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  H8Z73_RS16690 (H8Z73_16695) pilR 3869644..3871038 (+) 1395 WP_005930970.1 sigma-54 dependent transcriptional regulator Regulator
  H8Z73_RS16695 (H8Z73_16700) - 3871243..3871410 (-) 168 WP_015463523.1 hypothetical protein -
  H8Z73_RS16700 (H8Z73_16705) pilB 3871542..3871661 (-) 120 WP_005915819.1 hypothetical protein Machinery gene
  H8Z73_RS16705 (H8Z73_16710) pilB 3872155..3873891 (-) 1737 WP_011052125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H8Z73_RS16710 (H8Z73_16715) - 3873955..3874410 (-) 456 WP_015463526.1 pilin -
  H8Z73_RS16715 (H8Z73_16720) - 3874520..3874960 (-) 441 WP_015471735.1 pilin -
  H8Z73_RS16720 (H8Z73_16725) pilC 3875318..3876574 (+) 1257 WP_040107659.1 type II secretion system F family protein Machinery gene
  H8Z73_RS16725 (H8Z73_16730) - 3876581..3877444 (+) 864 WP_003491180.1 A24 family peptidase -
  H8Z73_RS16730 (H8Z73_16735) coaE 3877458..3878066 (+) 609 WP_011052129.1 dephospho-CoA kinase -
  H8Z73_RS16735 (H8Z73_16740) - 3878290..3882813 (+) 4524 WP_040153736.1 RHS repeat domain-containing protein -
  H8Z73_RS16740 (H8Z73_16745) - 3883448..3883813 (+) 366 WP_076605127.1 SymE family type I addiction module toxin -
  H8Z73_RS16745 (H8Z73_16750) - 3883827..3884072 (+) 246 Protein_3285 transposase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50177.62 Da        Isoelectric Point: 6.5718

>NTDB_id=476214 H8Z73_RS16690 WP_005930970.1 3869644..3871038(+) (pilR) [Xanthomonas citri pv. citri strain DAR72029]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=476214 H8Z73_RS16690 WP_005930970.1 3869644..3871038(+) (pilR) [Xanthomonas citri pv. citri strain DAR72029]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTTTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U5FKR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491