Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   H8S71_RS17520 Genome accession   NZ_CP060417
Coordinates   3425749..3426438 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3420749..3431438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS17485 (H8S71_17480) flgN 3420929..3421411 (-) 483 WP_014481048.1 flagellar protein FlgN -
  H8S71_RS17490 (H8S71_17485) flgM 3421427..3421693 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  H8S71_RS17495 (H8S71_17490) yvyF 3421774..3422193 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  H8S71_RS17500 (H8S71_17495) comFC 3422267..3422989 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  H8S71_RS17505 (H8S71_17500) comFB 3422953..3423249 (-) 297 WP_003227989.1 late competence protein ComFB -
  H8S71_RS17510 (H8S71_17505) comFA 3423309..3424700 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  H8S71_RS17515 (H8S71_17510) fakBA 3424806..3425651 (-) 846 WP_169037657.1 DegV family protein -
  H8S71_RS17520 (H8S71_17515) degU 3425749..3426438 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H8S71_RS17525 (H8S71_17520) degS 3426521..3427678 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  H8S71_RS17530 (H8S71_17525) yvyE 3427895..3428548 (+) 654 WP_003227979.1 YigZ family protein -
  H8S71_RS17535 (H8S71_17530) tagV 3428548..3429723 (+) 1176 WP_169037656.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  H8S71_RS17540 (H8S71_17535) tagO 3429796..3430872 (-) 1077 WP_032726968.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=475920 H8S71_RS17520 WP_003219701.1 3425749..3426438(-) (degU) [Bacillus subtilis subsp. subtilis strain ONU 559]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=475920 H8S71_RS17520 WP_003219701.1 3425749..3426438(-) (degU) [Bacillus subtilis subsp. subtilis strain ONU 559]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1