Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   H8S71_RS17500 Genome accession   NZ_CP060417
Coordinates   3422267..3422989 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3417267..3427989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS17465 (H8S71_17460) fliW 3417406..3417837 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  H8S71_RS17470 (H8S71_17465) yviE 3417858..3418433 (-) 576 WP_014481045.1 DUF6470 family protein -
  H8S71_RS17475 (H8S71_17470) flgL 3418480..3419376 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  H8S71_RS17480 (H8S71_17475) flgK 3419387..3420910 (-) 1524 WP_163135878.1 flagellar hook-associated protein FlgK -
  H8S71_RS17485 (H8S71_17480) flgN 3420929..3421411 (-) 483 WP_014481048.1 flagellar protein FlgN -
  H8S71_RS17490 (H8S71_17485) flgM 3421427..3421693 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  H8S71_RS17495 (H8S71_17490) yvyF 3421774..3422193 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  H8S71_RS17500 (H8S71_17495) comFC 3422267..3422989 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  H8S71_RS17505 (H8S71_17500) comFB 3422953..3423249 (-) 297 WP_003227989.1 late competence protein ComFB -
  H8S71_RS17510 (H8S71_17505) comFA 3423309..3424700 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  H8S71_RS17515 (H8S71_17510) fakBA 3424806..3425651 (-) 846 WP_169037657.1 DegV family protein -
  H8S71_RS17520 (H8S71_17515) degU 3425749..3426438 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H8S71_RS17525 (H8S71_17520) degS 3426521..3427678 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=475918 H8S71_RS17500 WP_014481051.1 3422267..3422989(-) (comFC) [Bacillus subtilis subsp. subtilis strain ONU 559]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=475918 H8S71_RS17500 WP_014481051.1 3422267..3422989(-) (comFC) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992