Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   H8S71_RS17510 Genome accession   NZ_CP060417
Coordinates   3423309..3424700 (-) Length   463 a.a.
NCBI ID   WP_070547860.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3418309..3429700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS17475 (H8S71_17470) flgL 3418480..3419376 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  H8S71_RS17480 (H8S71_17475) flgK 3419387..3420910 (-) 1524 WP_163135878.1 flagellar hook-associated protein FlgK -
  H8S71_RS17485 (H8S71_17480) flgN 3420929..3421411 (-) 483 WP_014481048.1 flagellar protein FlgN -
  H8S71_RS17490 (H8S71_17485) flgM 3421427..3421693 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  H8S71_RS17495 (H8S71_17490) yvyF 3421774..3422193 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  H8S71_RS17500 (H8S71_17495) comFC 3422267..3422989 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  H8S71_RS17505 (H8S71_17500) comFB 3422953..3423249 (-) 297 WP_003227989.1 late competence protein ComFB -
  H8S71_RS17510 (H8S71_17505) comFA 3423309..3424700 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  H8S71_RS17515 (H8S71_17510) fakBA 3424806..3425651 (-) 846 WP_169037657.1 DegV family protein -
  H8S71_RS17520 (H8S71_17515) degU 3425749..3426438 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H8S71_RS17525 (H8S71_17520) degS 3426521..3427678 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  H8S71_RS17530 (H8S71_17525) yvyE 3427895..3428548 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52557.52 Da        Isoelectric Point: 9.7976

>NTDB_id=475919 H8S71_RS17510 WP_070547860.1 3423309..3424700(-) (comFA) [Bacillus subtilis subsp. subtilis strain ONU 559]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGAEISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=475919 H8S71_RS17510 WP_070547860.1 3423309..3424700(-) (comFA) [Bacillus subtilis subsp. subtilis strain ONU 559]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGAAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTCTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGAAATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAGTTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.84

100

0.978