Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JHY03_RS09735 Genome accession   NZ_CP071044
Coordinates   2217321..2219054 (+) Length   577 a.a.
NCBI ID   WP_055558911.1    Uniprot ID   A0A6N9V9Y0
Organism   Streptomyces sp. CA-256286     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2212321..2224054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHY03_RS09700 (JHY03_19490) - 2212912..2213121 (+) 210 WP_031126055.1 MbtH family protein -
  JHY03_RS09705 (JHY03_19500) - 2213172..2214314 (+) 1143 WP_031126054.1 glycine amidinotransferase -
  JHY03_RS09725 (JHY03_19540) - 2215350..2215658 (+) 309 WP_015608334.1 secreted protein -
  JHY03_RS09730 (JHY03_19550) - 2215725..2217179 (+) 1455 WP_031126053.1 FGGY family carbohydrate kinase -
  JHY03_RS09735 (JHY03_19560) rcrP 2217321..2219054 (+) 1734 WP_055558911.1 ABC transporter ATP-binding protein Regulator
  JHY03_RS09740 (JHY03_19570) - 2219054..2220982 (+) 1929 WP_031126051.1 ABC transporter ATP-binding protein -
  JHY03_RS09745 (JHY03_19580) - 2220998..2222146 (-) 1149 WP_164357345.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62441.55 Da        Isoelectric Point: 5.5402

>NTDB_id=475919 JHY03_RS09735 WP_055558911.1 2217321..2219054(+) (rcrP) [Streptomyces sp. CA-256286]
MLIKLLRAHLAPYKKPIALLVFLQLLQTCATLYLPSLNADIIDNGVVTGDTGYILEFGGLMIAVSVLQVLCNVGAVFYGA
RTASALGRDVRGAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGISVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTESSVVP
PVSPVTELRRHGHLEVRGAEFRYPGAEEPVLRAVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPVLLAKTVSLVPQKPYLFSGTVSTNLRYGNPDATDEELWHALEVAQAKGFVEGLEHGLEAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAGATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=475919 JHY03_RS09735 WP_055558911.1 2217321..2219054(+) (rcrP) [Streptomyces sp. CA-256286]
GTGCTCATAAAACTCCTGCGGGCCCATCTGGCCCCGTACAAGAAACCCATCGCGCTGCTGGTCTTCCTGCAGCTGCTTCA
GACCTGCGCGACCCTGTATCTGCCCAGCCTGAACGCGGACATCATCGACAACGGTGTCGTCACGGGCGATACCGGTTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGCGTGCTGCAGGTGCTCTGCAATGTGGGGGCCGTTTTCTACGGGGCC
CGGACGGCGTCGGCGCTGGGGCGGGATGTGCGGGGTGCCGTCTTCGACCGGGTGCAGTCGTTCTCGGCCCGGGAGCTCGG
GCGGTTCGGTGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGGCGTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGGCAGGACGTTCCGCTGTCGGCGGTA
CTGCTGGCGGTGGTGCCGGTGCTCGGCATCTCGGTGAGCCTCATCGTGAAGAGGATGCGGCCGCTGTTCCGGACGATGCA
GGAGCGGCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCGTTCGTCCGCGACG
GGTACGAGGAGAAGCGGTTCCGGGGCGCCAACACCGAGCTGACCGATGTGTCGGTGGCGACGGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTCAACCTGTCGTCCGTCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
GGGGATGCAGATAGGGGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTGCTCGGTACCGAGTCGAGCGTCGTGCCG
CCCGTCTCCCCCGTCACCGAGCTGCGGCGGCACGGGCATCTGGAGGTGCGCGGTGCGGAGTTCCGGTACCCGGGTGCCGA
GGAGCCGGTGCTGCGGGCCGTGGATCTGGTGGCGCGGCCCGGGGAGACCACCGCGATCATCGGGTCGACGGGGAGCGGGA
AGTCCACGCTGCTCGGTCTCGTACCCCGGCTGTTCGATGTGACGGACGGCGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTCGATCCGGTGCTGCTGGCGAAGACGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTCTCGAC
GAACCTGCGGTACGGGAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGGTTCG
TGGAGGGCCTCGAGCACGGTCTGGAGGCGCCGATCGCGCAGGGCGGCACCAATGTGTCGGGCGGTCAGCGGCAGCGGCTC
GCCATCGCCCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
TGCCGCGCTGCGGGCGGCGCTGGCGCGGGAGACTGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTCTCCACCATCC
GCGACGCCGACCGGATCCTGGTGCTGGACGAGGGGCGGGTCGTGGGCAGCGGTACCCATCACGAGTTGATGGACGGCAAT
GAAACGTACCGCGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N9V9Y0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.309

100

0.407