Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   H8S71_RS02155 Genome accession   NZ_CP060417
Coordinates   428731..429879 (+) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 423731..434879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS02135 (H8S71_02130) yclH 424107..424787 (-) 681 WP_080528920.1 ABC transporter ATP-binding protein -
  H8S71_RS02140 (H8S71_02135) yclI 424803..426263 (-) 1461 WP_038428354.1 ABC transporter permease -
  H8S71_RS02145 (H8S71_02140) yclJ 426476..427159 (+) 684 WP_003246532.1 two-component system response regulator YclJ -
  H8S71_RS02150 (H8S71_02145) yclK 427146..428567 (+) 1422 WP_187002058.1 two-component system sensor histidine kinase YclK -
  H8S71_RS02155 (H8S71_02150) rapC 428731..429879 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  H8S71_RS02160 (H8S71_02155) phrC 429863..429985 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  H8S71_RS02165 (H8S71_02160) yczM 430084..430173 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  H8S71_RS02170 (H8S71_02165) yczN 430255..430368 (-) 114 WP_014478831.1 YjcZ family sporulation protein -
  H8S71_RS02175 (H8S71_02170) thrD 430521..431885 (-) 1365 WP_187002059.1 aspartate kinase -
  H8S71_RS02180 (H8S71_02175) ceuB 432270..433220 (+) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  H8S71_RS02185 (H8S71_02180) yclO 433213..434160 (+) 948 WP_125121454.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=475860 H8S71_RS02155 WP_014475800.1 428731..429879(+) (rapC) [Bacillus subtilis subsp. subtilis strain ONU 559]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=475860 H8S71_RS02155 WP_014475800.1 428731..429879(+) (rapC) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCAGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGGTTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568