Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H7A79_RS12235 Genome accession   NZ_CP060414
Coordinates   2363715..2364011 (+) Length   98 a.a.
NCBI ID   WP_135034493.1    Uniprot ID   -
Organism   Neisseria musculi strain NW831     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2358715..2369011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A79_RS12235 (H7A79_2269) comE 2363715..2364011 (+) 297 WP_135034493.1 helix-hairpin-helix domain-containing protein Machinery gene
  H7A79_RS12240 (H7A79_2270) - 2364124..2364615 (-) 492 WP_187000394.1 hypothetical protein -
  H7A79_RS12245 - 2365002..2365648 (-) 647 Protein_2390 IS1595 family transposase -
  H7A79_RS12250 (H7A79_2271) asd 2365711..2366832 (-) 1122 WP_135035810.1 aspartate-semialdehyde dehydrogenase -
  H7A79_RS12255 (H7A79_2272) - 2366980..2367579 (+) 600 WP_187000395.1 RDD family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10157.91 Da        Isoelectric Point: 10.2803

>NTDB_id=475848 H7A79_RS12235 WP_135034493.1 2363715..2364011(+) (comE) [Neisseria musculi strain NW831]
MKLYLLGILSAITPTLLLAAVNINTATAEELKALPGIGPSKAAAIVEYRSQNGSFKSVDDLKNVKGIGEGILSKLREEAT
VEGKAAGKAQPAVKKPAK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=475848 H7A79_RS12235 WP_135034493.1 2363715..2364011(+) (comE) [Neisseria musculi strain NW831]
CTGAAACTTTATTTATTGGGTATCTTGAGCGCGATAACCCCGACGCTGTTGCTGGCGGCGGTAAACATCAACACGGCAAC
GGCGGAGGAGCTGAAGGCGCTGCCGGGGATAGGGCCCTCGAAGGCTGCCGCGATAGTGGAGTACCGCAGTCAGAACGGCA
GCTTTAAAAGCGTGGACGATTTGAAGAATGTGAAAGGGATAGGCGAAGGGATTCTGTCCAAGTTGAGGGAGGAAGCAACG
GTAGAGGGCAAAGCAGCGGGGAAAGCGCAGCCGGCAGTGAAGAAACCGGCCAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

53.608

98.98

0.531
  comE Neisseria gonorrhoeae MS11

53.608

98.98

0.531
  comE Neisseria gonorrhoeae MS11

53.608

98.98

0.531
  comE Neisseria gonorrhoeae MS11

53.608

98.98

0.531
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.564

79.592

0.418