Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   H7A79_RS08090 Genome accession   NZ_CP060414
Coordinates   1543699..1544163 (-) Length   154 a.a.
NCBI ID   WP_187001662.1    Uniprot ID   A0A7H1M8Q1
Organism   Neisseria musculi strain NW831     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1538699..1549163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A79_RS08070 (H7A79_1490) bfr 1538820..1539293 (-) 474 WP_186999897.1 bacterioferritin -
  H7A79_RS08075 (H7A79_1491) bfr 1539318..1539782 (-) 465 WP_135033619.1 bacterioferritin -
  H7A79_RS08080 (H7A79_1492) typA 1540226..1542037 (+) 1812 WP_186999898.1 translational GTPase TypA -
  H7A79_RS08085 (H7A79_1493) - 1542764..1543534 (+) 771 WP_186999899.1 SDR family NAD(P)-dependent oxidoreductase -
  H7A79_RS08090 (H7A79_1494) comP 1543699..1544163 (-) 465 WP_187001662.1 type IV pilin protein Machinery gene
  H7A79_RS08095 (H7A79_1495) - 1544259..1544732 (-) 474 WP_135033614.1 type IV pilin protein -
  H7A79_RS08100 (H7A79_1496) - 1545171..1546343 (+) 1173 WP_186999900.1 efflux RND transporter periplasmic adaptor subunit -
  H7A79_RS08105 (H7A79_1497) - 1546356..1548293 (+) 1938 WP_186999901.1 MacB family efflux pump subunit -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17232.70 Da        Isoelectric Point: 8.4956

>NTDB_id=475832 H7A79_RS08090 WP_187001662.1 1543699..1544163(-) (comP) [Neisseria musculi strain NW831]
MQDASQKGFTLIELLAAVAVLSVLVMIAVPSYQKYIRDARLNHVRAVLLQNAHFMERFYQQRRSFKQTSTTWPALPYAET
EHFCIRPQGNARGAHDGKFTLKAVAFDKSGEPRVIKINESLITVICESSDSACSDNDSFFAGGAKVDQQCKVFQ

Nucleotide


Download         Length: 465 bp        

>NTDB_id=475832 H7A79_RS08090 WP_187001662.1 1543699..1544163(-) (comP) [Neisseria musculi strain NW831]
ATGCAAGACGCTAGTCAAAAAGGCTTTACGCTGATTGAGTTGCTCGCTGCCGTAGCGGTATTGTCCGTCTTGGTTATGAT
TGCCGTTCCGTCCTATCAAAAATATATCCGCGATGCCCGATTGAACCATGTCCGTGCGGTGCTTTTGCAAAATGCTCATT
TCATGGAGCGTTTTTACCAGCAGCGCCGCTCATTCAAACAAACTTCTACTACTTGGCCCGCGCTGCCGTATGCGGAAACC
GAGCATTTCTGTATCCGCCCGCAGGGCAACGCCCGTGGTGCGCACGATGGTAAATTTACCTTGAAAGCTGTTGCGTTCGA
TAAAAGCGGTGAGCCGCGCGTGATCAAAATCAACGAATCGTTAATCACCGTGATATGTGAAAGCAGCGACAGTGCCTGTT
CGGATAATGATAGTTTTTTTGCCGGTGGGGCAAAAGTAGATCAACAGTGCAAAGTATTCCAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H1M8Q1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria meningitidis 8013

55.705

96.753

0.539
  comP Neisseria gonorrhoeae MS11

55.034

96.753

0.532
  comP Neisseria subflava NJ9703

45.333

97.403

0.442