Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   JS608_RS19430 Genome accession   NZ_CP071042
Coordinates   3899616..3901601 (-) Length   661 a.a.
NCBI ID   WP_015387640.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3894616..3906601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS19410 (JS608_03880) - 3894800..3895897 (-) 1098 WP_003151446.1 DUF4097 domain-containing protein -
  JS608_RS19415 (JS608_03881) - 3895922..3896248 (-) 327 WP_003151444.1 hypothetical protein -
  JS608_RS19420 (JS608_03882) - 3896447..3896686 (+) 240 WP_003151443.1 hypothetical protein -
  JS608_RS19425 (JS608_03883) uvrA 3896735..3899608 (-) 2874 WP_003151441.1 excinuclease ABC subunit UvrA Machinery gene
  JS608_RS19430 (JS608_03884) uvrB 3899616..3901601 (-) 1986 WP_015387640.1 excinuclease ABC subunit UvrB Machinery gene
  JS608_RS19435 (JS608_03885) - 3901777..3902013 (-) 237 WP_003151438.1 CsbA family protein -
  JS608_RS19440 (JS608_03886) - 3902314..3904815 (+) 2502 WP_069449036.1 PEP/pyruvate-binding domain-containing protein -
  JS608_RS19445 (JS608_03887) - 3904887..3905510 (+) 624 WP_014305917.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76466.25 Da        Isoelectric Point: 5.1932

>NTDB_id=475745 JS608_RS19430 WP_015387640.1 3899616..3901601(-) (uvrB) [Bacillus amyloliquefaciens isolate ELA1901024]
MKDRFELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRPEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAILNIEQELEERLKVMRENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTPEMIEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITNSM
EIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAEDKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAAR
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=475745 JS608_RS19430 WP_015387640.1 3899616..3901601(-) (uvrB) [Bacillus amyloliquefaciens isolate ELA1901024]
GTGAAAGATCGTTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGCAAGCGATTGAGAAGCTTGTCAAAGG
CATACAGGAAGGCAGAAAACACCAGACTCTCCTGGGTGCGACAGGGACGGGCAAAACCTTTACCGTGTCCAATCTGATTA
AAGAAGTGAACAAACCGACACTGGTCATTGCCCATAACAAAACCCTTGCCGGACAGCTGTACAGCGAGTTTAAGGAGTTT
TTCCCGAACAACGCTGTCGAGTATTTTGTCAGCTATTACGATTACTATCAGCCGGAGGCGTACGTGCCTCAAACGGATAC
TTTTATAGAGAAAGACGCAAGCATTAATGATGAAATTGATAAACTGAGACATTCCGCGACATCCTCTCTGTTTGAACGGA
GAGATGTCATTATTATCGCGAGTGTGTCATGCATATACGGCCTCGGTTCGCCTGAAGAATACCGGGAAATGGTCGTGTCG
CTCAGACCGGAAATGGAGATTGAGCGGAACGAGCTTCTGAGAAAGCTTGTGGATATCCAGTATGCCCGCAATGATATCGA
CTTTCAGCGCGGGACGTTCCGCGTGCGCGGAGACGTTGTGGAAATCTTCCCGGCTTCCCGTGACGAACATTGTATCAGAG
TGGAATTTTTCGGAGACGAAATTGAGCGGATCAGAGAGGTCGACGCTTTGACCGGAGAAATTCTCGGCGACCGTGACCAT
GTCGCGATTTTCCCGGCTTCCCACTTCGTCACCCGGGCGGAAAAGATGGAAAAAGCGATTCTGAATATTGAACAGGAGCT
TGAGGAGCGCTTGAAAGTGATGCGCGAAAACGGCAAGCTCCTTGAAGCGCAGCGGCTTGAGCAGCGGACGAGGTATGATC
TTGAAATGATGCGGGAAATGGGTTTTTGCTCAGGGATCGAGAACTATTCAAGACATTTGACGCTCCGTCCTCCTGGTTCT
ACGCCGTATACGCTGCTTGATTATTTTCCGGACGATTTTATGATTGTCGTTGATGAATCACATGTGACGATTCCGCAGGT
GCGCGGCATGTTCAACGGTGACCAGGCGAGAAAACAGGTGCTTGTCGATCACGGGTTCCGCCTGCCGTCAGCGCTTGACA
ACCGTCCGCTCCGATTCGAGGAATTTGAAAAGCATATGCACAATATCGTGTACGTGTCGGCGACTCCGGGACCGTATGAA
ATTGAGCATACGCCGGAAATGATCGAGCAGATCATCAGACCGACGGGACTCCTCGATCCCCTCATTGACGTCCGTCCGAT
CGAAGGACAGATTGATGATCTGATCGGCGAGATTCAGGCGAGGATTGAACGGAATGAACGCGTTCTCGTGACGACTTTAA
CGAAAAAAATGTCAGAGGATCTGACCGATTATCTCAAAGAAATCGGCATCAAGGTCAATTATCTGCATTCCGAGATTAAG
ACGCTTGAACGGATTGAAATCATCCGTGATCTCCGCCTCGGAAAACATGATGTGTTAATCGGCATCAACCTGCTGAGGGA
AGGGCTTGATATTCCGGAAGTGTCACTTGTCGCCATTCTCGATGCGGATAAAGAAGGCTTCCTCCGTTCTGAACGTTCGC
TGATTCAGACGATCGGACGGGCGGCCAGAAACGCGGAAGGCCGCGTCATCATGTATGCCGATAAAATCACGAATTCGATG
GAAATCGCGATTAATGAAACGAAGCGCCGCCGGGAACAGCAGGAGCGCTTTAACGAAATTCACGGCATTACGCCGCAAAC
GATCAATAAGGAAATCCGCGATGTGATCCGCGCGACGCAGGCCGCTGAGGATAAAGAAGAATATAAAACAAAAGCCGCGC
CTAAACTGGCGAAGATGACGAAGAAAGAACGCCAGAAAGTCGTTGAGCAAATGGAGCACGAAATGAAAGAAGCGGCCAGA
GCGCTTGATTTCGAGCGGGCGGCAGAGCTTCGTGATTTACTGTTAGAGCTTAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(12-130)

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

UvrB/uvrC motif (UVR)

(626-659)

Ultra-violet resistance protein B (UvrB)

(551-593)

UvrB interaction domain (UvrB_inter)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.472

99.395

0.7
  uvrB Streptococcus pneumoniae R6

70.32

99.395

0.699
  uvrB Streptococcus pneumoniae D39

70.32

99.395

0.699