Detailed information NTG0475719

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: XHV734_RS04835
• Genome accession: NZ_CP060399
• Coordinates: 1172498..1173556 (+)
• Length: 352 a.a.
• NCBI ID: WP_043909467.1
• Uniprot ID: A0A0G8KJ77
• Organism: Xanthomonas hortorum pv. vitians strain LM16734
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1167498..1178556

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XHV734_RS04820 (XHV734_1128)	-	1167599..1168888 (+)	1290	WP_006451360.1	citrate synthase	-
XHV734_RS04825 (XHV734_1129)	-	1168992..1169642 (-)	651	WP_074058178.1	hypothetical protein	-
XHV734_RS04830 (XHV734_1130)	-	1169856..1172282 (-)	2427	WP_074058177.1	penicillin-binding protein 1A	-
XHV734_RS04835 (XHV734_1131)	comM	1172498..1173556 (+)	1059	WP_043909467.1	pilus assembly protein PilM	Machinery gene
XHV734_RS04840 (XHV734_1132)	-	1173556..1174323 (+)	768	WP_074058176.1	PilN domain-containing protein	-
XHV734_RS04845 (XHV734_1133)	-	1174320..1174985 (+)	666	WP_006451354.1	type 4a pilus biogenesis protein PilO	-
XHV734_RS04850 (XHV734_1134)	-	1174982..1175515 (+)	534	WP_006451353.1	pilus assembly protein PilP	-
XHV734_RS04855 (XHV734_1135)	-	1175535..1177487 (+)	1953	WP_074058175.1	type IV pilus secretin PilQ family protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37624.24 Da
• Isoelectric Point: 4.3882

>NTDB_id=475719 XHV734_RS04835 WP_043909467.1 1172498..1173556(+) (comM) [Xanthomonas hortorum pv. vitians strain LM16734]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=475719 XHV734_RS04835 WP_043909467.1 1172498..1173556(+) (comM) [Xanthomonas hortorum pv. vitians strain LM16734]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
ACGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTGGAACCGTTGCCGCCGAACGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGACAGTGATATGGAAGCCCAGGTCGA
ACTCGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAAGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCTGCGCTGGAACTCGGT
GGCCTGGTTGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCGTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCTGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTGACCTACGAAGAA
GCCGGCCTGGCCAAGCGTCAGGGCGGGTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTTGCA
CAGATGACGCTCGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A0G8KJ77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	50.852	100	0.509
pilM	Acinetobacter baumannii D1279779	50.568	100	0.506
comM	Acinetobacter baylyi ADP1	50.712	99.716	0.506
pilM	Legionella pneumophila strain ERS1305867	47.293	99.716	0.472