Detailed information    

insolico Bioinformatically predicted

Overview


Name   stkP   Type   Regulator
Locus tag   JS608_RS10190 Genome accession   NZ_CP071042
Coordinates   2022064..2024007 (+) Length   647 a.a.
NCBI ID   WP_014304993.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context


Location: 2017064..2029007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS10165 (JS608_02028) def 2017440..2017922 (+) 483 WP_003154343.1 peptide deformylase -
  JS608_RS10170 (JS608_02029) fmt 2017927..2018879 (+) 953 Protein_1957 methionyl-tRNA formyltransferase -
  JS608_RS10175 (JS608_02030) rsmB 2018866..2020209 (+) 1344 WP_003154341.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JS608_RS10180 (JS608_02031) rlmN 2020212..2021303 (+) 1092 WP_003154339.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  JS608_RS10185 (JS608_02032) - 2021309..2022070 (+) 762 WP_014304992.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  JS608_RS10190 (JS608_02033) stkP 2022064..2024007 (+) 1944 WP_014304993.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  JS608_RS10195 (JS608_02034) rsgA 2024022..2024912 (+) 891 WP_003154333.1 ribosome small subunit-dependent GTPase A -
  JS608_RS10200 (JS608_02035) rpe 2024914..2025567 (+) 654 WP_003154331.1 ribulose-phosphate 3-epimerase -
  JS608_RS10205 (JS608_02036) - 2025633..2026277 (+) 645 WP_003154330.1 thiamine diphosphokinase -
  JS608_RS10210 spoVM 2026364..2026444 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  JS608_RS10215 (JS608_02037) rpmB 2026522..2026710 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  JS608_RS10220 (JS608_02038) - 2026969..2027331 (+) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -

Sequence


Protein


Download         Length: 647 a.a.        Molecular weight: 71741.29 Da        Isoelectric Point: 4.9851

>NTDB_id=475680 JS608_RS10190 WP_014304993.1 2022064..2024007(+) (stkP) [Bacillus amyloliquefaciens isolate ELA1901024]
MLTGKRISGRYHILRPIGGGGMANVFLAEDIILEREVAIKILRFDFVNDIDFIRRFRREAQSASSLDHPNIVSIYDIGEE
GDIYYIVMEYVEGMTLKEYINAHGPLHPKEALSVMEQIVSAIAHAHQNHIVHRDIKPHNILIDHLGHIKVTDFGIATALT
STTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGKIPFDGESAVSIALKHLQTETPSARKWNPSIPQS
VENIILKATAKDPFHRYESAEDMEADIRTAFDAGRLNEQKFSVQDDEEMTKAIPVITDGPKAASQAETPGETDDKEQQPA
KKKKRKWPWVLLAVCFIFIMAAVLAVTVFPSLFMPKDVSVPDVRGMKYEKAEALLEKNGLRADPDITDIEDEKIEEELMV
KTDPKAGSTVKEGSSVKLYKSIGKPKTQLIDVKGRQIGDAKKALKEKGFKHVNVKEENDDSEAGTVIDQDPSAGTDMVAS
DDEVNLTVSLGPADVTLRDLKTYSKEAASGYLEDNGLQLVEKQAHSDDVPEGQVMKQEPSAGTAVKPGSNVEVTFSLGPE
EKPAKTVKEKISIPYEPEHEGEELEVQIAIDDKDHSISDTYDSFKIKEPTEKTIELKIDQGQKGYYQVMVDHKVVSYKTI
EYPKDND

Nucleotide


Download         Length: 1944 bp        

>NTDB_id=475680 JS608_RS10190 WP_014304993.1 2022064..2024007(+) (stkP) [Bacillus amyloliquefaciens isolate ELA1901024]
GTGCTAACCGGCAAGCGGATCAGCGGGCGTTATCATATCCTCCGGCCCATTGGCGGCGGCGGAATGGCAAACGTTTTTTT
AGCTGAGGACATCATTCTCGAACGTGAAGTCGCAATTAAAATTCTGCGGTTTGACTTTGTGAATGACATTGATTTTATCA
GGCGTTTCAGAAGAGAAGCACAGTCGGCATCAAGCCTCGATCATCCGAATATCGTCAGTATTTACGATATCGGGGAGGAA
GGCGATATTTATTACATTGTCATGGAATATGTGGAAGGCATGACATTAAAGGAATACATAAACGCACACGGACCGCTTCA
TCCGAAAGAAGCGCTGTCCGTTATGGAGCAGATCGTCTCGGCCATCGCCCATGCCCATCAAAACCATATCGTGCACCGGG
ATATTAAACCGCACAATATATTGATAGATCATTTAGGGCATATCAAGGTGACGGATTTCGGCATCGCCACAGCGCTTACG
TCTACGACAATCACACATACGAATTCTGTGCTGGGCTCGGTTCATTATTTGTCTCCGGAGCAGGCGAGAGGCGGTCTGGC
AACGAAAAAATCAGATATTTACGCGCTCGGCATCGTGCTGTTTGAGCTTTTAACAGGCAAAATCCCTTTTGACGGAGAAT
CAGCCGTCAGCATAGCGCTAAAGCACCTGCAAACAGAAACGCCTTCCGCCAGAAAGTGGAACCCTTCCATTCCGCAGAGC
GTTGAAAACATTATTTTAAAGGCAACCGCCAAAGACCCGTTTCACCGCTATGAAAGCGCCGAGGACATGGAGGCGGACAT
CAGAACGGCTTTTGACGCCGGCAGGCTGAATGAACAAAAATTTTCCGTGCAGGATGATGAGGAAATGACAAAAGCCATTC
CCGTTATTACTGACGGCCCAAAAGCCGCGTCTCAGGCGGAAACGCCGGGGGAGACGGATGATAAGGAACAGCAGCCAGCC
AAAAAGAAAAAACGGAAATGGCCGTGGGTTTTGCTGGCCGTCTGTTTCATTTTTATTATGGCGGCTGTTCTTGCGGTCAC
CGTGTTCCCGTCTTTATTTATGCCTAAAGATGTAAGCGTCCCCGACGTACGGGGCATGAAGTACGAAAAAGCGGAAGCCC
TGCTTGAAAAGAACGGGCTCCGGGCTGATCCTGATATAACGGATATTGAAGATGAAAAAATAGAAGAGGAATTAATGGTC
AAAACGGACCCAAAAGCGGGGTCTACCGTTAAAGAAGGCTCTTCTGTAAAACTGTACAAAAGCATCGGAAAACCGAAAAC
CCAGCTGATCGACGTGAAAGGACGGCAGATCGGCGACGCAAAAAAAGCGCTGAAGGAAAAAGGTTTCAAACATGTCAATG
TCAAAGAAGAAAACGATGACAGCGAGGCCGGCACCGTAATTGATCAGGACCCGTCAGCCGGCACCGATATGGTCGCAAGC
GATGATGAAGTCAATCTAACGGTCAGCCTCGGCCCGGCGGACGTTACGCTGAGGGACTTAAAGACTTACAGCAAAGAAGC
GGCTTCAGGGTATCTTGAAGATAACGGCCTGCAGCTTGTTGAAAAACAAGCCCATTCAGATGACGTGCCGGAAGGACAAG
TCATGAAACAAGAGCCGTCAGCCGGCACTGCGGTTAAGCCGGGAAGTAATGTTGAAGTGACGTTCTCGCTCGGACCTGAA
GAAAAACCGGCGAAAACGGTAAAAGAAAAAATCAGCATTCCTTACGAACCCGAACATGAAGGGGAAGAGCTTGAAGTGCA
AATCGCCATCGATGATAAGGACCACAGCATCTCTGATACGTATGACTCATTTAAAATAAAAGAGCCGACCGAAAAAACAA
TTGAACTGAAGATTGATCAGGGACAGAAGGGGTATTATCAAGTGATGGTCGATCATAAAGTCGTCAGCTACAAAACGATT
GAATACCCGAAAGATAATGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

38.961

95.209

0.371

  stkP Streptococcus pneumoniae D39

38.799

95.209

0.369

  stkP Streptococcus pneumoniae R6

38.799

95.209

0.369

  stkP Streptococcus pneumoniae Rx1

38.636

95.209

0.368