Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PSBA01_RS07285 Genome accession   NZ_CP060390
Coordinates   1708507..1708884 (+) Length   125 a.a.
NCBI ID   WP_186473648.1    Uniprot ID   -
Organism   Psychrobacter sp. KCTC 72983     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703507..1713884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSBA01_RS07275 - 1705550..1706272 (-) 723 WP_058025471.1 response regulator transcription factor -
  PSBA01_RS07280 - 1706571..1707827 (-) 1257 WP_186473646.1 HlyD family efflux transporter periplasmic adaptor subunit -
  PSBA01_RS07285 pilG 1708507..1708884 (+) 378 WP_186473648.1 twitching motility response regulator PilG Regulator
  PSBA01_RS07290 - 1709068..1709430 (+) 363 WP_071002986.1 response regulator -
  PSBA01_RS07295 - 1709434..1709964 (+) 531 WP_071002987.1 chemotaxis protein CheW -
  PSBA01_RS07300 - 1710479..1711552 (+) 1074 Protein_1424 methyl-accepting chemotaxis protein -
  PSBA01_RS07305 - 1711662..1712597 (+) 936 WP_228724533.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14072.16 Da        Isoelectric Point: 4.5807

>NTDB_id=475621 PSBA01_RS07285 WP_186473648.1 1708507..1708884(+) (pilG) [Psychrobacter sp. KCTC 72983]
MENNFEGLKVMVIDDSKTIRRTAETLLQKAGCEVVTAIDGFDALAKIVDNNPDMIFVDIMMPRLDGYQTCALIKNNPDYA
NKPVIMLSSKDGLFDKARGRIVGSDEYLTKPFSKDELFDAINQYR

Nucleotide


Download         Length: 378 bp        

>NTDB_id=475621 PSBA01_RS07285 WP_186473648.1 1708507..1708884(+) (pilG) [Psychrobacter sp. KCTC 72983]
ATGGAAAATAATTTTGAAGGTTTGAAAGTAATGGTGATTGATGATTCAAAAACCATTCGCCGTACCGCAGAAACCTTGCT
ACAAAAAGCGGGTTGTGAAGTCGTAACCGCTATAGATGGCTTCGATGCCTTAGCAAAAATTGTTGATAACAACCCAGATA
TGATTTTTGTCGACATCATGATGCCGCGCTTAGATGGCTATCAGACTTGTGCACTCATAAAAAATAACCCTGATTATGCT
AATAAACCCGTGATTATGTTGTCATCTAAAGATGGCTTATTTGATAAAGCCCGTGGCCGCATCGTCGGATCTGATGAGTA
TTTGACCAAACCATTTAGTAAAGATGAGCTTTTTGATGCGATTAACCAGTACCGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

77.419

99.2

0.768
  pilH Synechocystis sp. PCC 6803

41.228

91.2

0.376
  vicR Streptococcus mutans UA159

40.517

92.8

0.376