Detailed information NTG0475398

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: GGD92_RS10830
• Genome accession: NZ_CP060289
• Coordinates: 2443450..2445666 (-)
• Length: 738 a.a.
• NCBI ID: WP_179597454.1
• Uniprot ID: A0A7G7XFF7
• Organism: Pseudomonas protegens strain H1F10A
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2438450..2450666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GGD92_RS10795 (GGD92_10795)	murB	2438812..2439831 (-)	1020	WP_179597450.1	UDP-N-acetylmuramate dehydrogenase	-
GGD92_RS10800 (GGD92_10800)	-	2439828..2440292 (-)	465	WP_016968265.1	low molecular weight protein-tyrosine-phosphatase	-
GGD92_RS10805 (GGD92_10805)	kdsB	2440292..2441056 (-)	765	WP_179597452.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
GGD92_RS10810 (GGD92_10810)	-	2441053..2441238 (-)	186	WP_011060103.1	Trm112 family protein	-
GGD92_RS10815 (GGD92_10815)	lpxK	2441262..2442272 (-)	1011	WP_016968263.1	tetraacyldisaccharide 4'-kinase	-
GGD92_RS10820 (GGD92_10820)	-	2442272..2442700 (-)	429	WP_016968262.1	ExbD/TolR family protein	-
GGD92_RS10825 (GGD92_10825)	exbB	2442697..2443332 (-)	636	WP_016968261.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
GGD92_RS10830 (GGD92_10830)	comA	2443450..2445666 (-)	2217	WP_179597454.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
GGD92_RS10835 (GGD92_10835)	-	2445806..2446321 (+)	516	WP_016968259.1	DUF2062 domain-containing protein	-
GGD92_RS10840 (GGD92_10840)	-	2446375..2447154 (-)	780	WP_016968258.1	ABC transporter permease	-
GGD92_RS10845 (GGD92_10845)	-	2447151..2448083 (-)	933	WP_179597456.1	ABC transporter ATP-binding protein	-
GGD92_RS10850 (GGD92_10850)	-	2448216..2448839 (-)	624	WP_179597457.1	glutathione S-transferase family protein	-
GGD92_RS10855 (GGD92_10855)	-	2448882..2449541 (-)	660	WP_179597459.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 80929.33 Da
• Isoelectric Point: 11.5032

>NTDB_id=475398 GGD92_RS10830 WP_179597454.1 2443450..2445666(-) (comA) [Pseudomonas protegens strain H1F10A]
MGTGLLALAAGLLALGFLPVLPPVWLLLALAVVGMMLLPFRTHPVAFFLFGFAWACVSGHWALDDRLAPGLEGQTRWLEG
QVSGLPEQGQGVVRFELQAAQARRERLPQRMRLAWHDGPPLHSGERWRLAVKLRRPAGLLNVQGFDYQAWLLARRIGATG
TVKAGQLLRPARLAWREGLRQRLLGVEAQGRGAGLAALVMGDGSGLTRQDWQVLQDTGTVHLMVISGQHISLLAGVIYLG
VAGLARWGIWPERRPWLPWACALAFLGALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGVWRPWLLALNAVLLFEPL
ASLQPGFWLSFAAVAILILTFAGRLGRWRWWQAWSRAQWLIAIGLLPPLLALGLPISFSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPHLGEGLLWLAGGLLDGLFRLLGMIASAWPAWVAPLLPWWLWGLSALGALLLLLPTGVPLRVLGWPLLLLAV
WPPEPVLPEGEVEVWQLDVGQGLSMLLRTRDHAMLYDAGARVGDFDLGERVVLPTLRKLGIRRLDLMLLSHADNDHAGAA
LAVWRGIEVARVRSGEPGALPDALQAQPCESGLGWQWNGVRFRLWQWPAATDGNQASCVLQVEARGERLLLTGDIDLQAE
RALLASALAVHTHWLQAPHHGSRTSSSMALLQRLRPTAVLISRGRGNAFGHPHAEVLARYRRLGAAVHDSADQGALKLRL
GTFGPVQSLRAQRRFWRD

Nucleotide

• Length: 2217 bp

>NTDB_id=475398 GGD92_RS10830 WP_179597454.1 2443450..2445666(-) (comA) [Pseudomonas protegens strain H1F10A]
ATGGGCACGGGTTTGCTGGCGTTGGCCGCGGGGCTGCTGGCGCTGGGTTTTCTGCCGGTGTTGCCGCCGGTCTGGCTGTT
GCTGGCGCTGGCGGTCGTGGGGATGATGCTGCTGCCGTTTCGTACACATCCCGTGGCATTTTTTCTGTTCGGTTTCGCCT
GGGCTTGCGTCTCCGGGCATTGGGCCCTGGATGATCGCCTGGCGCCTGGCCTGGAGGGGCAAACCCGCTGGCTGGAGGGG
CAGGTCAGTGGTTTGCCGGAGCAGGGCCAGGGCGTGGTGCGCTTCGAACTGCAGGCCGCCCAGGCGCGGCGCGAGCGTCT
GCCGCAGCGGATGCGTCTGGCCTGGCATGACGGCCCACCGCTGCACAGTGGCGAGCGCTGGCGCTTGGCGGTCAAGCTGC
GGCGTCCCGCCGGGCTGCTCAATGTCCAGGGATTCGATTACCAGGCCTGGCTGCTGGCGCGGCGCATCGGGGCCACCGGT
ACGGTCAAGGCCGGGCAATTGCTCAGGCCCGCCCGGCTGGCCTGGCGTGAGGGGCTGCGCCAGCGCCTGCTGGGGGTCGA
GGCACAAGGACGTGGCGCCGGGCTGGCGGCACTGGTGATGGGCGACGGCTCGGGCCTGACGCGCCAGGACTGGCAGGTGT
TGCAGGACACCGGCACGGTGCACCTGATGGTGATTTCCGGTCAGCACATCAGTCTGCTGGCCGGGGTGATCTACCTCGGG
GTGGCCGGGCTCGCCCGCTGGGGCATCTGGCCCGAGCGCCGGCCATGGCTGCCCTGGGCCTGTGCCCTGGCCTTTCTCGG
GGCTCTGGGCTATGGCCTGCTGGCCGGGTTCGATGTGCCGGTGCAACGGGCTTGCGTGATGGTCGCCCTGGTCCTGCTCT
GGCGTCTGCGCTTTCGCCATCTGGGCGTCTGGCGACCCTGGCTGCTGGCGTTGAATGCGGTGTTGCTGTTCGAGCCCCTG
GCCAGTTTGCAGCCGGGATTCTGGCTGTCGTTTGCCGCGGTGGCGATCCTGATTCTCACCTTCGCCGGGCGCCTGGGGCG
CTGGCGCTGGTGGCAGGCCTGGAGCCGGGCCCAGTGGCTGATCGCCATTGGCCTGCTGCCGCCGCTGCTGGCCCTGGGGT
TGCCCATCAGTTTCAGCGGTCCCCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCCCTG
CTGGGGTGTCTGCTGCTGCCGGTGCCCCATCTGGGCGAGGGCTTGCTGTGGTTGGCCGGGGGGCTGCTGGATGGGCTGTT
TCGCCTATTGGGGATGATCGCCAGTGCCTGGCCGGCCTGGGTGGCGCCGTTGCTGCCCTGGTGGCTTTGGGGGCTCAGTG
CCCTGGGGGCCTTGCTGTTGCTCCTGCCCACTGGTGTGCCGCTGCGGGTGCTGGGGTGGCCGCTGCTGCTATTGGCTGTC
TGGCCGCCCGAGCCCGTGCTGCCCGAGGGTGAGGTGGAGGTCTGGCAACTGGACGTGGGGCAGGGGCTGTCGATGCTCCT
GCGCACCCGCGATCACGCCATGCTCTACGACGCTGGCGCCCGGGTGGGGGATTTCGACCTTGGCGAGCGGGTGGTGCTGC
CAACCTTGCGCAAGTTGGGGATCAGGCGGTTGGACCTGATGCTGCTCAGTCACGCTGACAACGATCATGCCGGTGCCGCC
CTCGCGGTCTGGCGCGGAATCGAGGTGGCACGGGTGCGCAGCGGCGAGCCCGGGGCATTGCCCGACGCCTTGCAAGCCCA
GCCTTGCGAGTCCGGCCTGGGCTGGCAATGGAATGGGGTGCGCTTTCGGCTGTGGCAATGGCCGGCGGCGACCGATGGCA
ACCAGGCCTCCTGCGTGTTGCAGGTCGAGGCCCGTGGCGAGCGTCTGCTGCTCACCGGCGACATCGACCTGCAGGCCGAA
CGGGCCTTGCTCGCCAGTGCGCTGGCGGTTCACACCCACTGGTTGCAGGCGCCCCATCATGGCAGTCGCACGTCTTCGTC
CATGGCCCTGCTGCAACGCCTGCGACCGACGGCGGTGCTGATTTCCCGCGGGCGAGGCAATGCCTTCGGTCATCCCCATG
CCGAGGTGCTGGCGCGCTATCGACGGTTGGGGGCGGCTGTTCATGACAGCGCCGATCAAGGTGCGCTGAAACTGCGCCTG
GGGACTTTCGGGCCCGTGCAAAGCCTGCGCGCGCAGCGGCGTTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-679)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

3D structure

• AlphaFold DB: A0A7G7XFF7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.286	96.748	0.622
comA	Ralstonia pseudosolanacearum GMI1000	32.113	100	0.369