Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GGD92_RS10825 Genome accession   NZ_CP060289
Coordinates   2442697..2443332 (-) Length   211 a.a.
NCBI ID   WP_016968261.1    Uniprot ID   A0AAD1B7L4
Organism   Pseudomonas protegens strain H1F10A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2437697..2448332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGD92_RS10790 (GGD92_10790) - 2438090..2438560 (-) 471 WP_016968267.1 (2Fe-2S)-binding protein -
  GGD92_RS10795 (GGD92_10795) murB 2438812..2439831 (-) 1020 WP_179597450.1 UDP-N-acetylmuramate dehydrogenase -
  GGD92_RS10800 (GGD92_10800) - 2439828..2440292 (-) 465 WP_016968265.1 low molecular weight protein-tyrosine-phosphatase -
  GGD92_RS10805 (GGD92_10805) kdsB 2440292..2441056 (-) 765 WP_179597452.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GGD92_RS10810 (GGD92_10810) - 2441053..2441238 (-) 186 WP_011060103.1 Trm112 family protein -
  GGD92_RS10815 (GGD92_10815) lpxK 2441262..2442272 (-) 1011 WP_016968263.1 tetraacyldisaccharide 4'-kinase -
  GGD92_RS10820 (GGD92_10820) - 2442272..2442700 (-) 429 WP_016968262.1 ExbD/TolR family protein -
  GGD92_RS10825 (GGD92_10825) exbB 2442697..2443332 (-) 636 WP_016968261.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GGD92_RS10830 (GGD92_10830) comA 2443450..2445666 (-) 2217 WP_179597454.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GGD92_RS10835 (GGD92_10835) - 2445806..2446321 (+) 516 WP_016968259.1 DUF2062 domain-containing protein -
  GGD92_RS10840 (GGD92_10840) - 2446375..2447154 (-) 780 WP_016968258.1 ABC transporter permease -
  GGD92_RS10845 (GGD92_10845) - 2447151..2448083 (-) 933 WP_179597456.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23019.19 Da        Isoelectric Point: 7.4247

>NTDB_id=475397 GGD92_RS10825 WP_016968261.1 2442697..2443332(-) (exbB) [Pseudomonas protegens strain H1F10A]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=475397 GGD92_RS10825 WP_016968261.1 2442697..2443332(-) (exbB) [Pseudomonas protegens strain H1F10A]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTGTGGGCATCATTGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGGGTTACCCCGCCCCATCTGTTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGAAAAACTCAAGGAACTGCGCGCCGATTCGCCCCTGGGCGAGATCCTGGCCGCGGGGCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATTGAAGAGGCGGCAGCCCGCGTGATTCACGAGCTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTCTTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCCCACGTGCTGGCCGGCGGTATTTCCAAGGCCTTGATCACCACTGCC
GCGGGGCTGATGGTGGGCATTCCTTCGGTGTTCTTCCATCGCTTCCTGCAACGTCGGGTCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGCGATGTCGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877