Detailed information NTG0475386

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: H7683_RS18245
• Genome accession: NZ_CP060288
• Coordinates: 3915184..3917397 (+)
• Length: 737 a.a.
• NCBI ID: WP_209451051.1
• Uniprot ID: -
• Organism: Pseudomonas mendocina strain CPS5
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3910184..3922397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7683_RS18220 (H7683_18215)	-	3910430..3910996 (-)	567	WP_013714794.1	PilZ domain-containing protein	-
H7683_RS18225 (H7683_18220)	-	3911287..3912534 (+)	1248	WP_017361511.1	lipoprotein-releasing ABC transporter permease subunit	-
H7683_RS18230 (H7683_18225)	lolD	3912539..3913240 (+)	702	WP_209449516.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
H7683_RS18235 (H7683_18230)	-	3913240..3914484 (+)	1245	WP_209449517.1	lipoprotein-releasing ABC transporter permease subunit	-
H7683_RS18240 (H7683_18235)	-	3914518..3915045 (-)	528	WP_013714799.1	DUF2062 domain-containing protein	-
H7683_RS18245 (H7683_18240)	comA	3915184..3917397 (+)	2214	WP_209451051.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
H7683_RS18250 (H7683_18245)	exbB	3917454..3918086 (+)	633	WP_013714801.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
H7683_RS18255 (H7683_18250)	-	3918083..3918511 (+)	429	WP_209449518.1	biopolymer transporter ExbD	-
H7683_RS18260 (H7683_18255)	lpxK	3918512..3919513 (+)	1002	WP_209449519.1	tetraacyldisaccharide 4'-kinase	-
H7683_RS18265 (H7683_18260)	-	3919536..3919721 (+)	186	WP_013714804.1	Trm112 family protein	-
H7683_RS18270 (H7683_18265)	kdsB	3919722..3920486 (+)	765	WP_143498066.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
H7683_RS18275 (H7683_18270)	-	3920486..3920950 (+)	465	WP_143498065.1	low molecular weight protein-tyrosine-phosphatase	-
H7683_RS18280 (H7683_18275)	murB	3920947..3921966 (+)	1020	WP_017361503.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 79928.04 Da
• Isoelectric Point: 9.6705

>NTDB_id=475386 H7683_RS18245 WP_209451051.1 3915184..3917397(+) (comA) [Pseudomonas mendocina strain CPS5]
MLALALGLLSLRFLPSLPPGWLLLVAACVGLALLLSRLYPLGFFLLGLAWACNSAQWALEDRLGPELDGRTLWLEGRVVG
LPEVSDGVVRFLLEDAHSRRADLPKRLRVAWYGGPAVQGGERWRLAVNLKRPHGLVNPQSFDYEAWLLAQRIGATGTIKS
GQRLAPASGLGSWRDSLRQRLLAAPAVEREGAIAALVLGDGSGLSTKDWRLLQHTGTVHLMVISGQHIGLLAGFLYGLVA
LLAKLGAWPARWPWLPCACALALGGALTYGLLAGFEVPVRRACVMVALVLLWRMRFRHLGAWWPLLLALIVVLLLEPLAS
LQPGFWLSFSAVAILALVFGGRLGVWGWWRGLTRAQWTMAIGLLPMMLVLGLPVSSSGPLANLIAVPWVGLVVVPLALLG
TLLLPIPMLGEGLLWLAGGALHLLFELLGIIAGWLPAWLPSVLPLWAWWLAAAGALLLLLPAGVPLRLPGLALLLPALLL
PAPHLDDGRADIWVLDVGQGLAVLVRTREHALLYDAGPRFGDFDTGERIVLPSLRALNLRQLDVMLLSHADNDHAGGAAA
IKAGMPVSRVVSGEPRRLADALGAEACESGQSWQWNEVTFRLWQWQRASSGNQLSCVLQIEAAGERLLLTGDIDVQAERA
LMQADFPLSSQWLLAPHHGSRTSSSQAFIDAVGAQHVLITRSRHNAFGHPHPQVLERYRAAGVLVHDTALDGALHLRLGE
HGAARALRREPRFWREK

Nucleotide

• Length: 2214 bp

>NTDB_id=475386 H7683_RS18245 WP_209451051.1 3915184..3917397(+) (comA) [Pseudomonas mendocina strain CPS5]
ATGTTGGCGCTGGCCTTGGGGCTGCTCAGCTTGCGCTTTCTACCGAGCCTGCCGCCAGGCTGGCTGTTGCTGGTTGCAGC
TTGTGTCGGCCTGGCTTTGCTGCTCTCGCGTCTCTATCCGCTGGGGTTCTTTTTGCTGGGGCTGGCCTGGGCCTGCAATT
CTGCGCAGTGGGCGCTGGAGGATCGCCTCGGCCCTGAGCTCGACGGCCGCACGCTATGGCTGGAAGGGCGGGTGGTCGGA
TTGCCCGAGGTATCCGATGGTGTTGTGCGCTTCCTGCTGGAGGATGCGCACTCGCGTCGCGCCGACCTGCCAAAAAGGTT
GCGGGTGGCCTGGTATGGCGGGCCGGCAGTGCAGGGCGGCGAGCGCTGGCGTCTGGCGGTCAACCTGAAGCGGCCGCATG
GCCTGGTCAATCCGCAGAGCTTCGACTACGAAGCCTGGTTACTGGCACAGCGTATCGGTGCCACAGGCACGATCAAATCC
GGTCAGCGCCTTGCTCCAGCTTCGGGCCTGGGCAGTTGGCGTGACAGCCTGCGCCAGCGCTTGTTGGCGGCGCCGGCTGT
TGAGCGCGAAGGCGCCATCGCTGCGCTGGTACTGGGCGACGGCTCTGGCTTGAGCACCAAAGATTGGCGCCTGTTGCAGC
ACACCGGCACGGTGCACCTGATGGTCATTTCCGGGCAGCACATCGGACTGCTGGCCGGCTTTCTCTATGGTTTGGTGGCC
TTGCTGGCCAAGCTCGGCGCATGGCCGGCGCGCTGGCCATGGCTACCTTGCGCCTGTGCTCTGGCGCTGGGCGGGGCCTT
GACCTATGGCTTGCTGGCGGGCTTCGAGGTGCCGGTGCGCAGGGCTTGCGTGATGGTCGCGTTGGTGCTGCTGTGGCGCA
TGCGCTTTCGTCATCTTGGTGCGTGGTGGCCATTGTTGCTGGCCTTGATCGTGGTTCTGCTGCTGGAGCCGCTGGCATCG
TTGCAGCCGGGTTTCTGGTTGTCGTTTTCGGCGGTGGCGATTCTGGCTCTTGTGTTTGGCGGTCGACTTGGCGTCTGGGG
TTGGTGGCGCGGGCTCACGCGTGCGCAATGGACCATGGCCATCGGCCTGTTGCCGATGATGTTAGTCCTCGGCCTGCCGG
TCAGCAGCAGCGGGCCGTTGGCCAATCTGATCGCCGTCCCCTGGGTCGGATTGGTGGTGGTGCCTCTGGCCTTGCTGGGC
ACCTTGCTGCTGCCTATACCAATGCTGGGCGAAGGGCTGTTGTGGCTGGCCGGTGGTGCGCTGCACCTGCTGTTCGAGTT
GCTCGGCATCATCGCCGGCTGGCTACCCGCCTGGTTGCCGAGCGTTCTGCCGCTGTGGGCATGGTGGCTGGCGGCAGCTG
GTGCTTTGCTGCTCCTTTTGCCGGCCGGGGTGCCGCTACGGTTGCCCGGTCTTGCGCTGTTGTTGCCCGCATTGTTATTG
CCAGCGCCGCATCTGGATGATGGTCGCGCCGACATCTGGGTGCTGGATGTGGGGCAAGGGCTGGCGGTGCTGGTGCGTAC
CCGAGAGCATGCTCTGCTGTACGACGCTGGGCCGCGCTTTGGTGATTTCGATACCGGTGAGCGCATCGTCCTGCCCTCGT
TGCGGGCGCTGAACCTCAGGCAGCTCGACGTGATGCTGCTCAGCCATGCCGATAACGATCATGCTGGCGGCGCGGCCGCG
ATCAAGGCCGGTATGCCGGTATCGAGGGTGGTCAGTGGTGAACCGCGAAGGCTGGCCGATGCGCTCGGCGCCGAAGCGTG
CGAGTCAGGACAAAGCTGGCAATGGAACGAGGTGACCTTCAGGCTTTGGCAGTGGCAGCGCGCCAGCTCCGGCAACCAGC
TGTCGTGCGTATTGCAGATAGAGGCTGCGGGCGAACGCCTGCTATTGACCGGCGATATCGACGTACAGGCCGAGCGGGCG
CTGATGCAGGCCGACTTTCCCCTGTCTTCGCAGTGGCTGCTGGCCCCTCATCATGGCAGTCGCACCTCGTCCAGCCAGGC
GTTCATCGATGCGGTTGGTGCGCAGCATGTGCTGATTACCCGCAGCCGCCACAATGCCTTCGGTCATCCTCATCCGCAGG
TGCTGGAGCGTTATCGGGCAGCAGGCGTGTTGGTCCATGACACGGCGCTCGATGGCGCGCTGCATCTGCGCCTGGGCGAG
CATGGCGCAGCGCGGGCATTGCGACGCGAGCCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (196-460)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-672)

• Domain of unknown function (DUF4131) (DUF4131) (17-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.967	97.422	0.662
comA	Ralstonia pseudosolanacearum GMI1000	36.498	100	0.402