Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H7683_RS18250 Genome accession   NZ_CP060288
Coordinates   3917454..3918086 (+) Length   210 a.a.
NCBI ID   WP_013714801.1    Uniprot ID   A0A1H0K8K5
Organism   Pseudomonas mendocina strain CPS5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3912454..3923086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7683_RS18230 (H7683_18225) lolD 3912539..3913240 (+) 702 WP_209449516.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  H7683_RS18235 (H7683_18230) - 3913240..3914484 (+) 1245 WP_209449517.1 lipoprotein-releasing ABC transporter permease subunit -
  H7683_RS18240 (H7683_18235) - 3914518..3915045 (-) 528 WP_013714799.1 DUF2062 domain-containing protein -
  H7683_RS18245 (H7683_18240) comA 3915184..3917397 (+) 2214 WP_209451051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H7683_RS18250 (H7683_18245) exbB 3917454..3918086 (+) 633 WP_013714801.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H7683_RS18255 (H7683_18250) - 3918083..3918511 (+) 429 WP_209449518.1 biopolymer transporter ExbD -
  H7683_RS18260 (H7683_18255) lpxK 3918512..3919513 (+) 1002 WP_209449519.1 tetraacyldisaccharide 4'-kinase -
  H7683_RS18265 (H7683_18260) - 3919536..3919721 (+) 186 WP_013714804.1 Trm112 family protein -
  H7683_RS18270 (H7683_18265) kdsB 3919722..3920486 (+) 765 WP_143498066.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H7683_RS18275 (H7683_18270) - 3920486..3920950 (+) 465 WP_143498065.1 low molecular weight protein-tyrosine-phosphatase -
  H7683_RS18280 (H7683_18275) murB 3920947..3921966 (+) 1020 WP_017361503.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22855.10 Da        Isoelectric Point: 7.8833

>NTDB_id=475387 H7683_RS18250 WP_013714801.1 3917454..3918086(+) (exbB) [Pseudomonas mendocina strain CPS5]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREDSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAPMLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=475387 H7683_RS18250 WP_013714801.1 3917454..3918086(+) (exbB) [Pseudomonas mendocina strain CPS5]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGTATCGTTGC
CGAGCGCCTGTGGACTCTGCGGCCCGCCCGCGTCACCCCAGCCAATCTGCTGGCTCAGGTATGGCGCTGGATCAAGGACA
AGAAACTCAATAACCAGAAACTCAAGGAACTGCGCGAGGATTCGCCGCTGGGGCAGATTCTCGCCGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCTGCCGCGCGCGTCATCCATGATCTGGAGCGTTACCT
CAATGCCCTGGGCACCATCGCCGGCATCGCTCCGCTGCTTGGCCTGCTCGGCACTGTGCTGGGCATGATCGAGATCTTCA
GTTCCTTCATGGGTTCGGGCATGGCCAATGCGCCGATGCTCGCCGGTGGTATCTCCAAGGCCCTGATCACCACGGCAGCC
GGCCTGATGGTGGCGATCCCGGCGCTGTTCTTCCATCGTTACCTGCAGCGCCGCGTCGATGAGCTGGTGGTCGGCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGTGATCGCGACGTCGACCTGGGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0K8K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

90

100

0.9