Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | H7992_RS09300 | Genome accession | NZ_CP060287 |
| Coordinates | 1860097..1860573 (+) | Length | 158 a.a. |
| NCBI ID | WP_187047842.1 | Uniprot ID | A0A7G8XD32 |
| Organism | Sporosarcina sp. resist | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1852438..1896388 | 1860097..1860573 | within | 0 |
Gene organization within MGE regions
Location: 1852438..1896388
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7992_RS09260 (H7992_09260) | - | 1852438..1852932 (+) | 495 | WP_187047347.1 | metallophosphoesterase | - |
| H7992_RS09270 (H7992_09270) | - | 1853237..1854340 (-) | 1104 | WP_370569983.1 | tyrosine-type recombinase/integrase | - |
| H7992_RS25040 (H7992_09275) | - | 1854363..1854629 (-) | 267 | WP_370569984.1 | ImmA/IrrE family metallo-endopeptidase | - |
| H7992_RS09280 (H7992_09280) | - | 1854633..1855169 (+) | 537 | WP_187047348.1 | DUF4238 domain-containing protein | - |
| H7992_RS09285 (H7992_09285) | - | 1856084..1857352 (+) | 1269 | WP_187047349.1 | Cthe_2314 family HEPN domain-containing protein | - |
| H7992_RS09290 (H7992_09290) | - | 1857959..1859239 (+) | 1281 | WP_187047350.1 | RecT family recombinase | - |
| H7992_RS09295 (H7992_09295) | - | 1859242..1860027 (+) | 786 | WP_187047351.1 | hypothetical protein | - |
| H7992_RS09300 (H7992_09300) | ssbA | 1860097..1860573 (+) | 477 | WP_187047842.1 | single-stranded DNA-binding protein | Machinery gene |
| H7992_RS09305 (H7992_09305) | - | 1860587..1861198 (+) | 612 | WP_187047352.1 | DUF6036 family nucleotidyltransferase | - |
| H7992_RS09310 (H7992_09310) | - | 1861245..1861610 (+) | 366 | WP_187047353.1 | hypothetical protein | - |
| H7992_RS09315 (H7992_09315) | - | 1861694..1862398 (+) | 705 | WP_187047354.1 | PD-(D/E)XK nuclease family protein | - |
| H7992_RS09320 (H7992_09320) | - | 1862990..1864543 (+) | 1554 | WP_187047355.1 | AAA family ATPase | - |
| H7992_RS09325 (H7992_09325) | - | 1864548..1865411 (+) | 864 | WP_187047356.1 | hypothetical protein | - |
| H7992_RS09330 (H7992_09330) | - | 1865760..1866008 (+) | 249 | WP_187047357.1 | hypothetical protein | - |
| H7992_RS09335 (H7992_09335) | - | 1866024..1866386 (+) | 363 | WP_187047358.1 | hypothetical protein | - |
| H7992_RS09340 (H7992_09340) | - | 1866504..1867091 (+) | 588 | WP_222618010.1 | JAB domain-containing protein | - |
| H7992_RS25045 (H7992_09345) | - | 1867003..1867545 (-) | 543 | Protein_1811 | tyrosine-type recombinase/integrase | - |
| H7992_RS24500 | - | 1867487..1867687 (-) | 201 | WP_222618011.1 | hypothetical protein | - |
| H7992_RS09350 (H7992_09350) | - | 1867680..1868915 (-) | 1236 | WP_187047359.1 | site-specific integrase | - |
| H7992_RS09355 (H7992_09355) | - | 1868944..1869762 (+) | 819 | WP_187047843.1 | reverse transcriptase domain-containing protein | - |
| H7992_RS09360 (H7992_09360) | - | 1870352..1870591 (-) | 240 | WP_187047360.1 | hypothetical protein | - |
| H7992_RS09365 (H7992_09365) | - | 1870855..1871916 (-) | 1062 | WP_187047361.1 | hypothetical protein | - |
| H7992_RS09370 (H7992_09370) | istA | 1872076..1873530 (+) | 1455 | WP_187046863.1 | IS21 family transposase | - |
| H7992_RS09375 (H7992_09375) | istB | 1873527..1874252 (+) | 726 | WP_255428599.1 | IS21-like element helper ATPase IstB | - |
| H7992_RS09380 (H7992_09380) | - | 1874516..1875811 (+) | 1296 | WP_187047362.1 | helix-turn-helix transcriptional regulator | - |
| H7992_RS24665 | - | 1875811..1875939 (+) | 129 | WP_255428632.1 | hypothetical protein | - |
| H7992_RS09385 (H7992_09385) | - | 1876766..1877122 (+) | 357 | WP_187047363.1 | ion channel | - |
| H7992_RS09390 (H7992_09390) | - | 1877385..1877573 (+) | 189 | WP_187047364.1 | hypothetical protein | - |
| H7992_RS09395 (H7992_09395) | tnpB | 1877570..1877923 (+) | 354 | WP_187047365.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| H7992_RS09400 (H7992_09400) | - | 1878110..1878427 (+) | 318 | WP_187047366.1 | hypothetical protein | - |
| H7992_RS09405 (H7992_09405) | - | 1878424..1878639 (+) | 216 | WP_187047367.1 | DUF2599 domain-containing protein | - |
| H7992_RS09410 (H7992_09410) | - | 1878695..1879588 (-) | 894 | Protein_1826 | IS3 family transposase | - |
| H7992_RS25050 | - | 1879603..1879767 (-) | 165 | WP_370570019.1 | hypothetical protein | - |
| H7992_RS25055 | - | 1879777..1879851 (-) | 75 | Protein_1828 | hypothetical protein | - |
| H7992_RS09415 (H7992_09415) | - | 1879986..1880174 (-) | 189 | WP_187047368.1 | hypothetical protein | - |
| H7992_RS09420 (H7992_09420) | istB | 1880171..1880926 (-) | 756 | WP_187047369.1 | IS21-like element helper ATPase IstB | - |
| H7992_RS24670 | - | 1880923..1881282 (-) | 360 | WP_255428633.1 | hypothetical protein | - |
| H7992_RS09425 (H7992_09425) | istA | 1881287..1882459 (-) | 1173 | WP_255428634.1 | IS21 family transposase | - |
| H7992_RS09430 (H7992_09430) | - | 1882629..1882811 (-) | 183 | WP_187047370.1 | transposase | - |
| H7992_RS09435 (H7992_09435) | - | 1882967..1884118 (+) | 1152 | WP_187047371.1 | S8 family peptidase | - |
| H7992_RS09440 (H7992_09440) | - | 1884249..1884863 (+) | 615 | WP_187047372.1 | sigma-70 family RNA polymerase sigma factor | - |
| H7992_RS09445 (H7992_09445) | - | 1884891..1885052 (+) | 162 | WP_187047373.1 | YvrJ family protein | - |
| H7992_RS09450 (H7992_09450) | - | 1885059..1885301 (+) | 243 | WP_187047374.1 | helix-turn-helix domain-containing protein | - |
| H7992_RS09460 (H7992_09460) | - | 1885622..1885837 (+) | 216 | WP_187047375.1 | glutaredoxin family protein | - |
| H7992_RS09465 (H7992_09465) | - | 1886415..1887541 (+) | 1127 | WP_187047376.1 | IS3 family transposase | - |
| H7992_RS25060 | - | 1888049..1888351 (+) | 303 | WP_370569985.1 | hypothetical protein | - |
| H7992_RS25065 | - | 1888415..1888999 (+) | 585 | WP_370569986.1 | IS3 family transposase | - |
| H7992_RS09475 (H7992_09475) | - | 1889028..1889300 (-) | 273 | WP_187047377.1 | hypothetical protein | - |
| H7992_RS24675 | - | 1889567..1889836 (+) | 270 | Protein_1843 | DDE-type integrase/transposase/recombinase | - |
| H7992_RS09480 (H7992_09480) | - | 1890009..1891103 (+) | 1095 | WP_187047378.1 | transposase | - |
| H7992_RS09485 (H7992_09485) | - | 1891119..1891682 (+) | 564 | WP_187047379.1 | transposase | - |
| H7992_RS09490 (H7992_09490) | - | 1891696..1891977 (-) | 282 | WP_187047380.1 | PrgI family protein | - |
| H7992_RS09495 (H7992_09495) | - | 1892123..1892431 (-) | 309 | WP_187047381.1 | hypothetical protein | - |
| H7992_RS09500 (H7992_09500) | - | 1893044..1893796 (+) | 753 | WP_187047382.1 | hypothetical protein | - |
| H7992_RS09505 (H7992_09505) | - | 1893882..1894274 (+) | 393 | WP_187047383.1 | hypothetical protein | - |
| H7992_RS09510 (H7992_09510) | - | 1894346..1896388 (+) | 2043 | WP_187047384.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17581.54 Da Isoelectric Point: 8.8645
>NTDB_id=475335 H7992_RS09300 WP_187047842.1 1860097..1860573(+) (ssbA) [Sporosarcina sp. resist]
MMNNVSLVGRLTKKPELKYTQNGVAVCNFMLAVKRPFKNANGENEADFIMVQVWRKPAENAANFLKKGSQAAVNGRISTR
HYENDKGDRIYVTEVVADFVQFLDPKPQGQGNQQRQGQESSQKQPNPYASNSNTQNQNGNQFETSGGPVVVSDDDLPF
MMNNVSLVGRLTKKPELKYTQNGVAVCNFMLAVKRPFKNANGENEADFIMVQVWRKPAENAANFLKKGSQAAVNGRISTR
HYENDKGDRIYVTEVVADFVQFLDPKPQGQGNQQRQGQESSQKQPNPYASNSNTQNQNGNQFETSGGPVVVSDDDLPF
Nucleotide
Download Length: 477 bp
>NTDB_id=475335 H7992_RS09300 WP_187047842.1 1860097..1860573(+) (ssbA) [Sporosarcina sp. resist]
ATTATGAATAACGTTAGTTTGGTAGGTCGTCTGACGAAAAAGCCAGAACTAAAATACACACAAAACGGTGTTGCTGTTTG
CAACTTTATGCTTGCAGTGAAGCGTCCATTTAAAAATGCTAATGGTGAAAATGAAGCTGACTTCATCATGGTTCAAGTTT
GGAGGAAACCTGCCGAAAATGCGGCTAACTTCCTTAAAAAAGGCAGTCAAGCTGCGGTGAATGGTCGTATTAGCACACGG
CATTATGAAAACGACAAGGGTGACCGTATATACGTCACAGAGGTTGTCGCTGACTTTGTACAATTTCTCGACCCGAAACC
TCAAGGTCAAGGCAACCAACAACGGCAAGGACAGGAGAGCTCCCAGAAACAGCCTAATCCTTACGCTAGTAACAGTAACA
CTCAAAATCAAAATGGTAATCAATTCGAAACGAGTGGAGGTCCTGTTGTGGTAAGCGATGATGACCTGCCATTCTAA
ATTATGAATAACGTTAGTTTGGTAGGTCGTCTGACGAAAAAGCCAGAACTAAAATACACACAAAACGGTGTTGCTGTTTG
CAACTTTATGCTTGCAGTGAAGCGTCCATTTAAAAATGCTAATGGTGAAAATGAAGCTGACTTCATCATGGTTCAAGTTT
GGAGGAAACCTGCCGAAAATGCGGCTAACTTCCTTAAAAAAGGCAGTCAAGCTGCGGTGAATGGTCGTATTAGCACACGG
CATTATGAAAACGACAAGGGTGACCGTATATACGTCACAGAGGTTGTCGCTGACTTTGTACAATTTCTCGACCCGAAACC
TCAAGGTCAAGGCAACCAACAACGGCAAGGACAGGAGAGCTCCCAGAAACAGCCTAATCCTTACGCTAGTAACAGTAACA
CTCAAAATCAAAATGGTAATCAATTCGAAACGAGTGGAGGTCCTGTTGTGGTAAGCGATGATGACCTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.163 |
100 |
0.557 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.882 |
100 |
0.494 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.333 |
68.354 |
0.399 |