Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   H7969_RS02655 Genome accession   NZ_CP060280
Coordinates   517586..518185 (+) Length   199 a.a.
NCBI ID   WP_186980787.1    Uniprot ID   -
Organism   Neisseria meningitidis strain LNP24198     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512586..523185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7969_RS02630 (H7969_02630) - 512898..513485 (-) 588 WP_002220670.1 superoxide dismutase -
  H7969_RS02635 (H7969_02635) dnaB 513648..515054 (+) 1407 WP_002220671.1 replicative DNA helicase -
  H7969_RS02640 (H7969_02640) pilH 515363..516037 (+) 675 WP_002247806.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H7969_RS02645 (H7969_02645) pilV 516061..516672 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  H7969_RS02650 (H7969_02650) pilJ 516669..517607 (+) 939 WP_002220674.1 PilW family protein Machinery gene
  H7969_RS02655 (H7969_02655) pilK 517586..518185 (+) 600 WP_186980787.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H7969_RS02660 (H7969_02660) pilX 518190..518663 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  H7969_RS02665 (H7969_02665) - 520411..520839 (-) 429 Protein_510 AzlC family ABC transporter permease -
  H7969_RS02670 (H7969_02670) dut 520982..521434 (+) 453 WP_002220679.1 dUTP diphosphatase -
  H7969_RS02675 (H7969_02675) dapC 521510..522697 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  H7969_RS11825 - 522785..522910 (+) 126 Protein_513 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21992.97 Da        Isoelectric Point: 7.6574

>NTDB_id=475198 H7969_RS02655 WP_186980787.1 517586..518185(+) (pilK) [Neisseria meningitidis strain LNP24198]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKGLCTAVNMRTNTNNGNEEAFDNIVVQGKPTVEAVKRSCPAKSTGLYIDNKGMEYKKGTRSVSKMPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=475198 H7969_RS02655 WP_186980787.1 517586..518185(+) (pilK) [Neisseria meningitidis strain LNP24198]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATATGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAAT
CTACAGGCCTGTACATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.177

100

0.899