Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   H7969_RS02640 Genome accession   NZ_CP060280
Coordinates   515363..516037 (+) Length   224 a.a.
NCBI ID   WP_002247806.1    Uniprot ID   A0AAD2J764
Organism   Neisseria meningitidis strain LNP24198     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510363..521037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7969_RS11820 - 511076..511183 (+) 108 Protein_500 IS5/IS1182 family transposase -
  H7969_RS02620 (H7969_02620) - 511228..511560 (+) 333 WP_002213854.1 hypothetical protein -
  H7969_RS02625 (H7969_02625) - 511891..512400 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  H7969_RS02630 (H7969_02630) - 512898..513485 (-) 588 WP_002220670.1 superoxide dismutase -
  H7969_RS02635 (H7969_02635) dnaB 513648..515054 (+) 1407 WP_002220671.1 replicative DNA helicase -
  H7969_RS02640 (H7969_02640) pilH 515363..516037 (+) 675 WP_002247806.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H7969_RS02645 (H7969_02645) pilV 516061..516672 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  H7969_RS02650 (H7969_02650) pilJ 516669..517607 (+) 939 WP_002220674.1 PilW family protein Machinery gene
  H7969_RS02655 (H7969_02655) pilK 517586..518185 (+) 600 WP_186980787.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H7969_RS02660 (H7969_02660) pilX 518190..518663 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  H7969_RS02665 (H7969_02665) - 520411..520839 (-) 429 Protein_510 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25135.80 Da        Isoelectric Point: 10.0449

>NTDB_id=475195 H7969_RS02640 WP_002247806.1 515363..516037(+) (pilH) [Neisseria meningitidis strain LNP24198]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGRGMLAFGDKNGNKAYDGDAADVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTKD
QHLTSKSSFFYSDGYIQIVLTDARAVLDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=475195 H7969_RS02640 WP_002247806.1 515363..516037(+) (pilH) [Neisseria meningitidis strain LNP24198]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGCGGCGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAAGAC
CAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTT
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTGATC
GGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

89.767

95.982

0.862