Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   H7969_RS02650 Genome accession   NZ_CP060280
Coordinates   516669..517607 (+) Length   312 a.a.
NCBI ID   WP_002220674.1    Uniprot ID   -
Organism   Neisseria meningitidis strain LNP24198     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 511669..522607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7969_RS02625 (H7969_02625) - 511891..512400 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  H7969_RS02630 (H7969_02630) - 512898..513485 (-) 588 WP_002220670.1 superoxide dismutase -
  H7969_RS02635 (H7969_02635) dnaB 513648..515054 (+) 1407 WP_002220671.1 replicative DNA helicase -
  H7969_RS02640 (H7969_02640) pilH 515363..516037 (+) 675 WP_002247806.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H7969_RS02645 (H7969_02645) pilV 516061..516672 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  H7969_RS02650 (H7969_02650) pilJ 516669..517607 (+) 939 WP_002220674.1 PilW family protein Machinery gene
  H7969_RS02655 (H7969_02655) pilK 517586..518185 (+) 600 WP_186980787.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H7969_RS02660 (H7969_02660) pilX 518190..518663 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  H7969_RS02665 (H7969_02665) - 520411..520839 (-) 429 Protein_510 AzlC family ABC transporter permease -
  H7969_RS02670 (H7969_02670) dut 520982..521434 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34508.22 Da        Isoelectric Point: 8.7082

>NTDB_id=475197 H7969_RS02650 WP_002220674.1 516669..517607(+) (pilJ) [Neisseria meningitidis strain LNP24198]
MRRKMLNVPKGNYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSEQQDLRNAATLIVRDARMAGSFG
CFNMSEHPAIDVISDTTQQNSPFSLKRNGIDKLIPIAESSNINYQNFFQFGSALIFQYGIDDVNASTATTVVSSCAVISK
PGKQIPTLEDAKKELKIPQDKEQNGNIARQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLVKKVRRMKVRYIYVF
GCPEDDDAGKEETFKYTDKFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNYIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=475197 H7969_RS02650 WP_002220674.1 516669..517607(+) (pilJ) [Neisseria meningitidis strain LNP24198]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAATTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAATTGATGTTATTTCCGATACGACGCAACAAAATTCTCCTTTTTCCTTAAAAAG
GAACGGTATAGATAAACTTATTCCCATAGCGGAATCTTCAAATATCAATTATCAGAATTTTTTCCAGTTTGGTAGCGCAT
TGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCACCGCGACTACCGTCGTCAGCAGCTGTGCCGTAATATCGAAA
CCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCCGCAGGATAAGGAGCAAAATGGCAATAT
AGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGG
ATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAGACGTATGAAAGTGCGGTATATCTATGTTTTC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAGCTCCACAAATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATTATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

83.544

100

0.846