Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DMSX03_RS12740 Genome accession   NZ_CP060271
Coordinates   2684949..2685464 (-) Length   171 a.a.
NCBI ID   WP_029378816.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain DMSX03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2679949..2690464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMSX03_RS12740 ssbA 2684949..2685464 (-) 516 WP_029378816.1 single-stranded DNA-binding protein Machinery gene
  DMSX03_RS12745 rpsF 2685483..2685788 (-) 306 WP_017723387.1 30S ribosomal protein S6 -
  DMSX03_RS12750 - 2686217..2687023 (+) 807 WP_186335416.1 GH25 family lysozyme -
  DMSX03_RS12755 ychF 2687174..2688271 (-) 1098 WP_029378814.1 redox-regulated ATPase YchF -
  DMSX03_RS12760 - 2688271..2688486 (-) 216 WP_029378813.1 DUF951 domain-containing protein -
  DMSX03_RS12765 - 2688508..2689392 (-) 885 WP_029378812.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19075.58 Da        Isoelectric Point: 4.9056

>NTDB_id=475117 DMSX03_RS12740 WP_029378816.1 2684949..2685464(-) (ssbA) [Staphylococcus xylosus strain DMSX03]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFQNFGGQQSGQNTSSYQNNNNNNNNTSNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=475117 DMSX03_RS12740 WP_029378816.1 2684949..2685464(-) (ssbA) [Staphylococcus xylosus strain DMSX03]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGGCGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGCCAAGAAGGGAATAATAATTTCCAAAACTTTGGTGGACAACAATCAGGACAAAATACATCGT
CATATCAAAATAACAATAATAACAACAACAATACATCAAATAATAATCAATCAGATAACCCATTTGCAAATGCAAACGGA
CCTATTGATATTAGTGATGACGACTTACCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.372

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.327

0.38