Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JR892_RS08565 Genome accession   NZ_CP070914
Coordinates   1816566..1817993 (-) Length   475 a.a.
NCBI ID   WP_072165052.1    Uniprot ID   -
Organism   Escherichia coli strain 65COLEC     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1811566..1822993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR892_RS08535 (JR892_08535) yeeZ 1811621..1812445 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  JR892_RS08540 (JR892_08540) yeeY 1812491..1813420 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JR892_RS08545 (JR892_08545) yoeI 1813635..1813697 (+) 63 WP_010723108.1 membrane protein YoeI -
  JR892_RS08550 (JR892_08550) plaP 1813687..1815045 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JR892_RS08555 (JR892_08555) tsuA 1815224..1816282 (+) 1059 WP_088537866.1 thiosulfate utilization transporter TsuA/YeeE -
  JR892_RS08560 (JR892_08560) tsuB 1816296..1816523 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JR892_RS08565 (JR892_08565) sbcB 1816566..1817993 (-) 1428 WP_072165052.1 exodeoxyribonuclease I Machinery gene
  JR892_RS08570 (JR892_08570) dacD 1818202..1819367 (+) 1166 Protein_1692 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JR892_RS08575 (JR892_08575) sbmC 1819486..1819959 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  JR892_RS08580 (JR892_08580) yeeA 1820158..1821216 (+) 1059 WP_001200891.1 FUSC family protein -
  JR892_RS08585 (JR892_08585) tmaR 1821388..1821717 (+) 330 WP_000450409.1 DUF496 family protein -
  JR892_RS08590 (JR892_08590) - 1821818..1822003 (-) 186 Protein_1696 EutP/PduV family microcompartment system protein -
  JR892_RS08595 (JR892_08595) - 1822054..1822200 (+) 147 Protein_1697 transposase domain-containing protein -
  JR892_RS08600 (JR892_08600) - 1822489..1822569 (-) 81 Protein_1698 hypothetical protein -
  JR892_RS08605 (JR892_08605) yeeW 1822615..1822809 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.76 Da        Isoelectric Point: 5.4700

>NTDB_id=474964 JR892_RS08565 WP_072165052.1 1816566..1817993(-) (sbcB) [Escherichia coli strain 65COLEC]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=474964 JR892_RS08565 WP_072165052.1 1816566..1817993(-) (sbcB) [Escherichia coli strain 65COLEC]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCACTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585