Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   H7F27_RS18820 Genome accession   NZ_CP060193
Coordinates   3713739..3714887 (-) Length   382 a.a.
NCBI ID   WP_024120212.1    Uniprot ID   A0A7G7UCE4
Organism   Bacillus sp. PAMC26543     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3708739..3719887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS18790 (H7F27_18790) yclO 3709388..3710335 (-) 948 WP_024120217.1 petrobactin ABC transporter permease YclO -
  H7F27_RS18795 (H7F27_18795) ceuB 3710328..3711278 (-) 951 WP_010333025.1 petrobactin ABC transporter permease YclN Machinery gene
  H7F27_RS18800 (H7F27_18800) - 3711664..3713028 (+) 1365 WP_185848283.1 aspartate kinase -
  H7F27_RS18805 (H7F27_18805) - 3713179..3713289 (+) 111 WP_024120215.1 YjcZ family sporulation protein -
  H7F27_RS18810 (H7F27_18810) - 3713436..3713528 (+) 93 WP_024120214.1 YjcZ family sporulation protein -
  H7F27_RS18815 (H7F27_18815) phrC 3713633..3713755 (-) 123 WP_024120213.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  H7F27_RS18820 (H7F27_18820) rapC 3713739..3714887 (-) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  H7F27_RS18825 (H7F27_18825) - 3715059..3716483 (-) 1425 WP_185848284.1 HAMP domain-containing sensor histidine kinase -
  H7F27_RS18830 (H7F27_18830) yclJ 3716470..3717153 (-) 684 WP_185848285.1 two-component system response regulator YclJ -
  H7F27_RS18835 (H7F27_18835) - 3717366..3718820 (+) 1455 WP_101860979.1 ABC transporter permease -
  H7F27_RS18840 (H7F27_18840) - 3718836..3719516 (+) 681 WP_185848286.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45690.75 Da        Isoelectric Point: 5.2483

>NTDB_id=474539 H7F27_RS18820 WP_024120212.1 3713739..3714887(-) (rapC) [Bacillus sp. PAMC26543]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVSDHIERAEFYFKIAEAYYYMKQTYF
SLIHIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALEMAEAEQKAQLVGRAFYNLGLCYYNQDLLD
PAIEHFEKAVSTFENSRITNSLPQAYFLITLIYYKRGKHEKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQAQPNTEG
IERCFRYLKNKNMYADIEDLGLEVAKYYYEQKWFELSASYFLRVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=474539 H7F27_RS18820 WP_024120212.1 3713739..3714887(-) (rapC) [Bacillus sp. PAMC26543]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGGACCTTCAGCGT
GCCGGATGCCGAGGTGCTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGTTATATT
ACTCACTAATGGAATTTCGCCACCAGCTTATGCTTGATTATCTCGAGCCGCTGGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCACGAAATATAGACAGCAACCAAGCTGATCTGAAAGGGCTTCTCGATTATTATGTGAATTTTTT
CCGCGGAATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATATTACAAACAGGCGGAGAAAAAACTTTCTT
TTGTTTCCGATCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTACTTT
TCATTGATTCATATCAAAAATGCATATGAAATTTATGTAGAGCAGGAAACCTATAATGTTCGGATTATCCAATGCCATTT
TGTGTTCGGGGTTAACCTCATGGATGAGAGAAATTTTGAACAAGCCGCACGGCATTTCAAATTGGCGCTGGAGATGGCGG
AAGCGGAACAAAAAGCCCAATTGGTCGGAAGAGCATTTTATAATTTAGGGCTGTGTTATTACAATCAAGACCTTCTCGAC
CCTGCCATTGAACATTTTGAGAAAGCGGTTTCCACTTTTGAAAACAGCAGAATCACCAATTCTCTGCCTCAAGCATATTT
TTTAATAACACTTATTTATTATAAACGCGGAAAACATGAGAAGGCCTCGGAATATCACAAGAGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTACGCGGTAAAATTTGAGTTTTTACAATCCCTATATCAGGCACAGCCCAATACAGAAGGA
ATCGAACGATGTTTCCGATATTTAAAAAATAAAAATATGTATGCTGATATAGAGGATTTAGGCCTAGAAGTAGCAAAATA
TTACTATGAACAAAAATGGTTTGAACTGTCTGCTTCCTACTTTCTTAGAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(224-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7UCE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

95.026

100

0.95
  rapF Bacillus subtilis subsp. subtilis str. 168

56.316

99.476

0.56