Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   H7F25_RS15055 Genome accession   NZ_CP060191
Coordinates   2960243..2960899 (-) Length   218 a.a.
NCBI ID   WP_253207496.1    Uniprot ID   -
Organism   Bacillus sp. PAMC28571     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2955243..2965899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F25_RS15020 (H7F25_15020) fliW 2955380..2955814 (-) 435 WP_024423615.1 flagellar assembly protein FliW -
  H7F25_RS15025 (H7F25_15025) - 2955843..2956421 (-) 579 WP_024426253.1 DUF6470 family protein -
  H7F25_RS15030 (H7F25_15030) flgL 2956468..2957376 (-) 909 WP_024423617.1 flagellar hook-associated protein FlgL -
  H7F25_RS15035 (H7F25_15035) flgK 2957386..2958906 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  H7F25_RS15040 (H7F25_15040) - 2958922..2959404 (-) 483 WP_034623751.1 flagellar protein FlgN -
  H7F25_RS15045 (H7F25_15045) flgM 2959423..2959686 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  H7F25_RS15050 (H7F25_15050) - 2959766..2960185 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  H7F25_RS15055 (H7F25_15055) comFC 2960243..2960899 (-) 657 WP_253207496.1 ComF family protein Machinery gene
  H7F25_RS15060 (H7F25_15060) - 2960926..2961219 (-) 294 WP_024423623.1 late competence development ComFB family protein -
  H7F25_RS15065 (H7F25_15065) comFA 2961268..2962665 (-) 1398 WP_142927723.1 DEAD/DEAH box helicase Machinery gene
  H7F25_RS15070 (H7F25_15070) - 2962786..2963628 (-) 843 WP_024423625.1 DegV family protein -
  H7F25_RS15075 (H7F25_15075) degU 2963844..2964533 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  H7F25_RS15080 (H7F25_15080) degS 2964598..2965773 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25007.18 Da        Isoelectric Point: 10.0431

>NTDB_id=474380 H7F25_RS15055 WP_253207496.1 2960243..2960899(-) (comFC) [Bacillus sp. PAMC28571]
MPAFTWKSFLLLNDDRLCIACKNHLVKIERPICPTCGRAQSNDQLCRDCNRWNERSDSIKILVKNRSVYTYNELMKDVLA
RFKFRGDTALAELFQKDVQAAFKHSFCIKDPLLIPIPLSHERLKERGFNQSVIIASLLDKPILQPLVKIHQSKQSKKKKN
ERLDQKGLFQIKQTDAIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 657 bp        

>NTDB_id=474380 H7F25_RS15055 WP_253207496.1 2960243..2960899(-) (comFC) [Bacillus sp. PAMC28571]
GTGCCTGCTTTTACATGGAAATCATTCCTACTATTAAATGATGATCGCCTTTGTATAGCATGTAAGAATCACCTAGTAAA
GATTGAGCGTCCTATTTGTCCAACATGCGGAAGGGCGCAGTCAAATGACCAATTGTGCCGGGACTGTAACAGATGGAATG
AACGCTCTGATTCTATTAAAATCCTTGTAAAAAATAGGTCAGTTTATACTTACAACGAGTTGATGAAAGATGTCCTTGCC
CGCTTTAAATTTCGGGGTGATACGGCTTTAGCTGAGCTGTTTCAAAAAGATGTACAAGCAGCATTTAAACATTCCTTCTG
CATAAAAGACCCATTGCTGATACCGATTCCTTTAAGTCATGAAAGACTAAAAGAAAGAGGATTTAATCAGTCCGTGATAA
TCGCTTCTTTGCTAGATAAGCCAATATTGCAGCCACTCGTGAAAATACATCAAAGTAAGCAGTCTAAAAAAAAGAAAAAT
GAACGCCTAGATCAAAAAGGATTGTTTCAAATAAAGCAAACAGATGCGATTGTTCAAAGGGATATTATATTAGTTGATGA
TATCTATACAACGGGAGCAACCATCTATGATGCGGCAAGAATTTTGAAAGACGCAGGTGCTAAAAGTGTTTCTTCTTTTA
CGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-49)

Phosphoribosyl transferase domain (Pribosyltran)

(127-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

50

99.083

0.495