Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   JT750_RS30340 Genome accession   NZ_CP070471
Coordinates   6582144..6584219 (+) Length   691 a.a.
NCBI ID   WP_033991777.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain B17932     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 6577144..6589219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT750_RS30310 (JT750_30310) - 6577563..6577943 (+) 381 WP_003096609.1 RidA family protein -
  JT750_RS30315 (JT750_30315) - 6577998..6578729 (+) 732 WP_003096611.1 hypothetical protein -
  JT750_RS30320 (JT750_30320) - 6578736..6579356 (-) 621 WP_033991773.1 LysE family translocator -
  JT750_RS30325 (JT750_30325) - 6579423..6580226 (-) 804 WP_033991776.1 AraC family transcriptional regulator -
  JT750_RS30330 (JT750_30330) - 6580226..6581077 (-) 852 WP_023092768.1 NAD-dependent epimerase/dehydratase family protein -
  JT750_RS30335 (JT750_30335) oxyR 6581215..6582147 (+) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  JT750_RS30340 (JT750_30340) recG 6582144..6584219 (+) 2076 WP_033991777.1 ATP-dependent DNA helicase RecG Machinery gene
  JT750_RS30345 (JT750_30345) - 6584309..6585718 (+) 1410 WP_003136268.1 HDOD domain-containing protein -
  JT750_RS30350 (JT750_30350) - 6585790..6586182 (-) 393 WP_003096629.1 hypothetical protein -
  JT750_RS30355 (JT750_30355) - 6586318..6586590 (-) 273 WP_003096630.1 HU family DNA-binding protein -
  JT750_RS30360 (JT750_30360) alkT 6586792..6587946 (-) 1155 WP_033990132.1 rubredoxin-NAD(+) reductase AlkT -
  JT750_RS30365 (JT750_30365) - 6587998..6588165 (-) 168 WP_003098329.1 rubredoxin -
  JT750_RS30370 (JT750_30370) - 6588349..6588516 (-) 168 WP_003098330.1 rubredoxin -
  JT750_RS30375 (JT750_30375) - 6588650..6589051 (-) 402 WP_003096637.1 heme-binding protein -

Sequence


Protein


Download         Length: 691 a.a.        Molecular weight: 76206.93 Da        Isoelectric Point: 7.2591

>NTDB_id=474375 JT750_RS30340 WP_033991777.1 6582144..6584219(+) (recG) [Pseudomonas aeruginosa strain B17932]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLVHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=474375 JT750_RS30340 WP_033991777.1 6582144..6584219(+) (recG) [Pseudomonas aeruginosa strain B17932]
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGCGCCTCGGGCCTGGAGATCTACCATCCGGAATATCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAAGGACTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGTCCCAGCAGCCTGCCCGACTGGCTACCGGCGGAACTGGCCCG
CGATTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT
CCAGCCAACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAACCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTAA
TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGCTACGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGTGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.373

97.106

0.489

  recG/mmsA Streptococcus pneumoniae R6

41.053

96.237

0.395

  recG/mmsA Streptococcus pneumoniae R36A

41.053

96.237

0.395

  recG Bacillus subtilis subsp. subtilis str. 168

40.267

97.395

0.392