Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   JRY11_RS07635 Genome accession   NZ_CP070382
Coordinates   1427586..1428584 (+) Length   332 a.a.
NCBI ID   WP_003129447.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1422586..1433584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS07620 (JRY11_001530) - 1422711..1423865 (+) 1155 WP_003129451.1 class I SAM-dependent RNA methyltransferase -
  JRY11_RS07625 (JRY11_001531) - 1424013..1426013 (+) 2001 WP_023189683.1 cell division site-positioning protein MapZ family protein -
  JRY11_RS07630 (JRY11_001532) - 1426283..1427371 (-) 1089 WP_003129448.1 Xaa-Pro peptidase family protein -
  JRY11_RS07635 (JRY11_001533) ccpA 1427586..1428584 (+) 999 WP_003129447.1 catabolite control protein A Regulator
  JRY11_RS07640 (JRY11_001534) - 1428723..1429688 (+) 966 WP_023189681.1 NAD(P)/FAD-dependent oxidoreductase -
  JRY11_RS07645 (JRY11_001535) - 1429848..1430408 (+) 561 WP_003129445.1 CvpA family protein -
  JRY11_RS07650 (JRY11_001536) mutS/mutS2 1430453..1432783 (+) 2331 WP_017864836.1 endonuclease MutS2 Machinery gene
  JRY11_RS07655 (JRY11_001537) trxA 1432880..1433194 (+) 315 WP_003129442.1 thioredoxin -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36602.71 Da        Isoelectric Point: 4.9196

>NTDB_id=474166 JRY11_RS07635 WP_003129447.1 1427586..1428584(+) (ccpA) [Lactococcus lactis strain KF140]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=474166 JRY11_RS07635 WP_003129447.1 1427586..1428584(+) (ccpA) [Lactococcus lactis strain KF140]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTCGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGTGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGAACGTATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  ccpA Streptococcus pneumoniae D39

57.402

99.699

0.572
  ccpA Streptococcus gordonii str. Challis substr. CH1

57.1

99.699

0.569