Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   H5405_RS17155 Genome accession   NZ_CP060085
Coordinates   3506140..3507288 (-) Length   382 a.a.
NCBI ID   WP_029326229.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3501140..3512288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS17125 (H5405_17125) - 3501278..3502036 (-) 759 WP_007609404.1 ABC transporter ATP-binding protein -
  H5405_RS17130 (H5405_17130) - 3502030..3502977 (-) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  H5405_RS17135 (H5405_17135) ceuB 3502967..3503920 (-) 954 WP_007609397.1 ABC transporter permease Machinery gene
  H5405_RS17140 (H5405_17140) - 3504334..3505698 (+) 1365 WP_007609394.1 aspartate kinase -
  H5405_RS17145 (H5405_17145) - 3505778..3505888 (+) 111 WP_369719092.1 YjcZ family sporulation protein -
  H5405_RS17150 (H5405_17150) phrC 3506037..3506156 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  H5405_RS17155 (H5405_17155) rapC 3506140..3507288 (-) 1149 WP_029326229.1 Rap family tetratricopeptide repeat protein Regulator
  H5405_RS17160 (H5405_17160) - 3507441..3508874 (-) 1434 WP_161631122.1 HAMP domain-containing sensor histidine kinase -
  H5405_RS17165 (H5405_17165) - 3508861..3509544 (-) 684 WP_007609386.1 response regulator transcription factor -
  H5405_RS17170 (H5405_17170) - 3509757..3511193 (+) 1437 WP_007609384.1 ABC transporter permease -
  H5405_RS17175 (H5405_17175) - 3511208..3511891 (+) 684 WP_007609382.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45406.59 Da        Isoelectric Point: 4.9221

>NTDB_id=473829 H5405_RS17155 WP_029326229.1 3506140..3507288(-) (rapC) [Bacillus velezensis strain HAB-2]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFSYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=473829 H5405_RS17155 WP_029326229.1 3506140..3507288(-) (rapC) [Bacillus velezensis strain HAB-2]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAATTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCAGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568