Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   H5405_RS17135 Genome accession   NZ_CP060085
Coordinates   3502967..3503920 (-) Length   317 a.a.
NCBI ID   WP_007609397.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3497967..3508920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS17115 (H5405_17115) - 3498846..3500270 (+) 1425 WP_007609408.1 MDR family MFS transporter -
  H5405_RS17120 (H5405_17120) - 3500312..3501256 (-) 945 WP_007609406.1 siderophore ABC transporter substrate-binding protein -
  H5405_RS17125 (H5405_17125) - 3501278..3502036 (-) 759 WP_007609404.1 ABC transporter ATP-binding protein -
  H5405_RS17130 (H5405_17130) - 3502030..3502977 (-) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  H5405_RS17135 (H5405_17135) ceuB 3502967..3503920 (-) 954 WP_007609397.1 ABC transporter permease Machinery gene
  H5405_RS17140 (H5405_17140) - 3504334..3505698 (+) 1365 WP_007609394.1 aspartate kinase -
  H5405_RS17145 (H5405_17145) - 3505778..3505888 (+) 111 WP_369719092.1 YjcZ family sporulation protein -
  H5405_RS17150 (H5405_17150) phrC 3506037..3506156 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  H5405_RS17155 (H5405_17155) rapC 3506140..3507288 (-) 1149 WP_029326229.1 Rap family tetratricopeptide repeat protein Regulator
  H5405_RS17160 (H5405_17160) - 3507441..3508874 (-) 1434 WP_161631122.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=473827 H5405_RS17135 WP_007609397.1 3502967..3503920(-) (ceuB) [Bacillus velezensis strain HAB-2]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSVATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSINLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=473827 H5405_RS17135 WP_007609397.1 3502967..3503920(-) (ceuB) [Bacillus velezensis strain HAB-2]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCCAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTGTTCATGAAAATTCTCGAGAGGATCAAGTTTAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAGTCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCGTCCTGGCTGCAGGGGGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCATCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTTATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGAGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533