Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   H5405_RS17150 Genome accession   NZ_CP060085
Coordinates   3506037..3506156 (-) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain HAB-2     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 3501037..3511156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS17125 (H5405_17125) - 3501278..3502036 (-) 759 WP_007609404.1 ABC transporter ATP-binding protein -
  H5405_RS17130 (H5405_17130) - 3502030..3502977 (-) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  H5405_RS17135 (H5405_17135) ceuB 3502967..3503920 (-) 954 WP_007609397.1 ABC transporter permease Machinery gene
  H5405_RS17140 (H5405_17140) - 3504334..3505698 (+) 1365 WP_007609394.1 aspartate kinase -
  H5405_RS17145 (H5405_17145) - 3505778..3505888 (+) 111 WP_369719092.1 YjcZ family sporulation protein -
  H5405_RS17150 (H5405_17150) phrC 3506037..3506156 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  H5405_RS17155 (H5405_17155) rapC 3506140..3507288 (-) 1149 WP_029326229.1 Rap family tetratricopeptide repeat protein Regulator
  H5405_RS17160 (H5405_17160) - 3507441..3508874 (-) 1434 WP_161631122.1 HAMP domain-containing sensor histidine kinase -
  H5405_RS17165 (H5405_17165) - 3508861..3509544 (-) 684 WP_007609386.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=473828 H5405_RS17150 WP_003156334.1 3506037..3506156(-) (phrC) [Bacillus velezensis strain HAB-2]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=473828 H5405_RS17150 WP_003156334.1 3506037..3506156(-) (phrC) [Bacillus velezensis strain HAB-2]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGAGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718