Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   H5405_RS04695 Genome accession   NZ_CP060085
Coordinates   928196..928840 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain HAB-2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 923196..933840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS04670 (H5405_04670) - 923641..923982 (-) 342 WP_007613435.1 hypothetical protein -
  H5405_RS04675 (H5405_04675) degQ 924448..924588 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  H5405_RS04680 (H5405_04680) - 924740..925651 (+) 912 WP_007613433.1 polyprenyl synthetase family protein -
  H5405_RS04685 (H5405_04685) comX 925651..925815 (+) 165 WP_007613432.1 competence pheromone ComX -
  H5405_RS04690 (H5405_04690) comP 925827..928115 (+) 2289 WP_007613431.1 histidine kinase Regulator
  H5405_RS04695 (H5405_04695) comA 928196..928840 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  H5405_RS04700 (H5405_04700) - 928862..929245 (+) 384 WP_007613430.1 hotdog fold thioesterase -
  H5405_RS04705 (H5405_04705) mnhG 929285..929659 (-) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  H5405_RS04710 (H5405_04710) - 929643..929927 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  H5405_RS04715 (H5405_04715) - 929927..930403 (-) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  H5405_RS04720 (H5405_04720) - 930409..931890 (-) 1482 WP_029326018.1 Na+/H+ antiporter subunit D -
  H5405_RS04725 (H5405_04725) - 931883..932224 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  H5405_RS04730 (H5405_04730) - 932224..932655 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=473779 H5405_RS04695 WP_003152052.1 928196..928840(+) (comA) [Bacillus velezensis strain HAB-2]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=473779 H5405_RS04695 WP_003152052.1 928196..928840(+) (comA) [Bacillus velezensis strain HAB-2]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864