Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   H5405_RS02775 Genome accession   NZ_CP060085
Coordinates   551865..552554 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain HAB-2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 546865..557554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS02755 (H5405_02755) - 547390..548466 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  H5405_RS02760 (H5405_02760) - 548569..549750 (-) 1182 WP_007614108.1 LCP family protein -
  H5405_RS02765 (H5405_02765) - 549755..550402 (-) 648 WP_007614107.1 YigZ family protein -
  H5405_RS02770 (H5405_02770) degS 550625..551788 (+) 1164 WP_007614106.1 two-component sensor histidine kinase DegS Regulator
  H5405_RS02775 (H5405_02775) degU 551865..552554 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H5405_RS02780 (H5405_02780) - 552652..553500 (+) 849 WP_007614105.1 DegV family protein -
  H5405_RS02785 (H5405_02785) comFA 553609..554994 (+) 1386 WP_007614104.1 DEAD/DEAH box helicase Machinery gene
  H5405_RS02790 (H5405_02790) - 555052..555336 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  H5405_RS02795 (H5405_02795) comFC 555342..556031 (+) 690 WP_200866785.1 phosphoribosyltransferase family protein Machinery gene
  H5405_RS02800 (H5405_02800) - 556105..556524 (+) 420 WP_007614102.1 TIGR03826 family flagellar region protein -
  H5405_RS02805 (H5405_02805) flgM 556594..556860 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  H5405_RS02810 (H5405_02810) - 556875..557357 (+) 483 WP_007614101.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=473772 H5405_RS02775 WP_003219701.1 551865..552554(+) (degU) [Bacillus velezensis strain HAB-2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=473772 H5405_RS02775 WP_003219701.1 551865..552554(+) (degU) [Bacillus velezensis strain HAB-2]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAATTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1