Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   H5405_RS02795 Genome accession   NZ_CP060085
Coordinates   555342..556031 (+) Length   229 a.a.
NCBI ID   WP_200866785.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 550342..561031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS02770 (H5405_02770) degS 550625..551788 (+) 1164 WP_007614106.1 two-component sensor histidine kinase DegS Regulator
  H5405_RS02775 (H5405_02775) degU 551865..552554 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H5405_RS02780 (H5405_02780) - 552652..553500 (+) 849 WP_007614105.1 DegV family protein -
  H5405_RS02785 (H5405_02785) comFA 553609..554994 (+) 1386 WP_007614104.1 DEAD/DEAH box helicase Machinery gene
  H5405_RS02790 (H5405_02790) - 555052..555336 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  H5405_RS02795 (H5405_02795) comFC 555342..556031 (+) 690 WP_200866785.1 phosphoribosyltransferase family protein Machinery gene
  H5405_RS02800 (H5405_02800) - 556105..556524 (+) 420 WP_007614102.1 TIGR03826 family flagellar region protein -
  H5405_RS02805 (H5405_02805) flgM 556594..556860 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  H5405_RS02810 (H5405_02810) - 556875..557357 (+) 483 WP_007614101.1 flagellar protein FlgN -
  H5405_RS02815 (H5405_02815) flgK 557373..558890 (+) 1518 WP_029325804.1 flagellar hook-associated protein FlgK -
  H5405_RS02820 (H5405_02820) flgL 558902..559819 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  H5405_RS02825 (H5405_02825) - 559911..560480 (+) 570 WP_007407476.1 DUF6470 family protein -
  H5405_RS02830 (H5405_02830) fliW 560510..560941 (+) 432 WP_007614098.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25213.83 Da        Isoelectric Point: 8.0779

>NTDB_id=473774 H5405_RS02795 WP_200866785.1 555342..556031(+) (comFC) [Bacillus velezensis strain HAB-2]
MNCLLCDSPITSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVASFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=473774 H5405_RS02795 WP_200866785.1 555342..556031(+) (comFC) [Bacillus velezensis strain HAB-2]
CTGAATTGTTTATTGTGTGACTCACCAATTACAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCGCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59