Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   H4B47_RS02480 Genome accession   NZ_CP060029
Coordinates   499587..499997 (-) Length   136 a.a.
NCBI ID   WP_002125991.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AbCTX1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 494587..504997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B47_RS02450 (H4B47_02455) - 494673..494942 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  H4B47_RS02455 (H4B47_02460) rapZ 494939..495790 (-) 852 WP_000821671.1 RNase adapter RapZ -
  H4B47_RS02460 (H4B47_02465) panC 495813..496661 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  H4B47_RS02465 (H4B47_02470) panB 496665..497474 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  H4B47_RS02470 (H4B47_02475) folK 497520..498002 (-) 483 WP_000219220.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  H4B47_RS02475 (H4B47_02480) pcnB 497999..499462 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  H4B47_RS02480 (H4B47_02485) comEA 499587..499997 (-) 411 WP_002125991.1 ComEA family DNA-binding protein Machinery gene
  H4B47_RS02485 (H4B47_02490) mazG 499966..500772 (-) 807 WP_000359482.1 nucleoside triphosphate pyrophosphohydrolase -
  H4B47_RS02490 (H4B47_02495) - 500884..501657 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  H4B47_RS02495 (H4B47_02500) - 501702..504008 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15672.97 Da        Isoelectric Point: 10.4475

>NTDB_id=473429 H4B47_RS02480 WP_002125991.1 499587..499997(-) (comEA) [Acinetobacter baumannii strain AbCTX1]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=473429 H4B47_RS02480 WP_002125991.1 499587..499997(-) (comEA) [Acinetobacter baumannii strain AbCTX1]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404