Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   H5028_RS01830 Genome accession   NZ_CP060013
Coordinates   394981..395463 (+) Length   160 a.a.
NCBI ID   WP_001046420.1    Uniprot ID   A0A7U3Y2Y6
Organism   Acinetobacter baumannii strain TP3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389981..400463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5028_RS01820 (H5028_01815) pilX 390284..391102 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H5028_RS01825 (H5028_01820) pilY1 391114..394968 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  H5028_RS01830 (H5028_01825) pilY2 394981..395463 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  H5028_RS01835 (H5028_01830) pilE 395460..395885 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  H5028_RS01840 (H5028_01835) rpsP 396032..396283 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  H5028_RS01845 (H5028_01840) rimM 396303..396851 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  H5028_RS01850 (H5028_01845) trmD 396897..397637 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H5028_RS01855 (H5028_01850) rplS 397846..398214 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  H5028_RS01860 (H5028_01855) - 398267..399208 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  H5028_RS01865 (H5028_01860) - 399323..400357 (-) 1035 WP_001189447.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.77 Da        Isoelectric Point: 8.4817

>NTDB_id=473351 H5028_RS01830 WP_001046420.1 394981..395463(+) (pilY2) [Acinetobacter baumannii strain TP3]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=473351 H5028_RS01830 WP_001046420.1 394981..395463(+) (pilY2) [Acinetobacter baumannii strain TP3]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.116

100

0.431