Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   I6K13_RS00525 Genome accession   NZ_CP070162
Coordinates   100843..101319 (-) Length   158 a.a.
NCBI ID   WP_001424026.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 95843..106319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K13_RS00480 (I6K13_00480) ulaC 95981..96445 (+) 465 WP_000776505.1 PTS ascorbate transporter subunit IIA -
  I6K13_RS00485 (I6K13_00485) ulaD 96459..97109 (+) 651 WP_000056749.1 3-keto-L-gulonate-6-phosphate decarboxylase UlaD -
  I6K13_RS00490 (I6K13_00490) - 97381..98228 (-) 848 Protein_94 DUF4942 domain-containing protein -
  I6K13_RS00495 (I6K13_00495) - 98313..98510 (-) 198 WP_000839236.1 DUF957 domain-containing protein -
  I6K13_RS00500 (I6K13_00500) - 98522..99009 (-) 488 Protein_96 DUF5983 family protein -
  I6K13_RS00505 (I6K13_00505) - 99006..99383 (-) 378 WP_000854689.1 TA system toxin CbtA family protein -
  I6K13_RS00510 (I6K13_00510) - 99460..99840 (-) 381 WP_001285599.1 type IV toxin-antitoxin system YeeU family antitoxin -
  I6K13_RS00515 (I6K13_00515) - 99890..100534 (-) 645 WP_000086755.1 hypothetical protein -
  I6K13_RS00520 (I6K13_00520) yeeT 100553..100774 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  I6K13_RS00525 (I6K13_00525) radC 100843..101319 (-) 477 WP_001424026.1 RadC family protein Machinery gene
  I6K13_RS00530 (I6K13_00530) - 101335..101808 (-) 474 WP_000855059.1 antirestriction protein -
  I6K13_RS00535 (I6K13_00535) - 102149..102970 (-) 822 WP_016244184.1 DUF932 domain-containing protein -
  I6K13_RS00540 (I6K13_00540) - 103071..103279 (-) 209 Protein_104 DUF905 family protein -
  I6K13_RS00545 (I6K13_00545) - 103380..103835 (-) 456 WP_000581506.1 IrmA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17683.27 Da        Isoelectric Point: 6.9859

>NTDB_id=473352 I6K13_RS00525 WP_001424026.1 100843..101319(-) (radC) [Escherichia coli strain FDAARGOS_1283]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=473352 I6K13_RS00525 WP_001424026.1 100843..101319(-) (radC) [Escherichia coli strain FDAARGOS_1283]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386