Detailed information NTG0473275

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HNQ25_RS16380
• Genome accession: NZ_CP060009
• Coordinates: 3485914..3488139 (-)
• Length: 741 a.a.
• NCBI ID: WP_244968146.1
• Uniprot ID: -
• Organism: Pseudomonas sediminis strain B10D7D
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3480914..3493139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HNQ25_RS16345 (HNQ25_16345)	murB	3481329..3482348 (-)	1020	WP_179545299.1	UDP-N-acetylmuramate dehydrogenase	-
HNQ25_RS16350 (HNQ25_16350)	-	3482345..3482809 (-)	465	WP_179545300.1	low molecular weight protein-tyrosine-phosphatase	-
HNQ25_RS16355 (HNQ25_16355)	kdsB	3482809..3483573 (-)	765	WP_179545301.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HNQ25_RS16360 (HNQ25_16360)	-	3483574..3483759 (-)	186	WP_013714804.1	Trm112 family protein	-
HNQ25_RS16365 (HNQ25_16365)	lpxK	3483782..3484783 (-)	1002	WP_179545302.1	tetraacyldisaccharide 4'-kinase	-
HNQ25_RS16370 (HNQ25_16370)	-	3484784..3485212 (-)	429	WP_099526424.1	biopolymer transporter ExbD	-
HNQ25_RS16375 (HNQ25_16375)	exbB	3485209..3485841 (-)	633	WP_017677620.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HNQ25_RS16380 (HNQ25_16380)	comA	3485914..3488139 (-)	2226	WP_244968146.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HNQ25_RS16385 (HNQ25_16385)	-	3488268..3488795 (+)	528	WP_125878644.1	DUF2062 domain-containing protein	-
HNQ25_RS16390 (HNQ25_16390)	-	3488833..3490077 (-)	1245	WP_179545303.1	lipoprotein-releasing ABC transporter permease subunit	-
HNQ25_RS16395 (HNQ25_16395)	lolD	3490077..3490778 (-)	702	WP_125835823.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
HNQ25_RS16400 (HNQ25_16400)	-	3490783..3492030 (-)	1248	WP_179545304.1	lipoprotein-releasing ABC transporter permease subunit	-
HNQ25_RS16405 (HNQ25_16405)	-	3492309..3492875 (+)	567	WP_003461983.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80691.99 Da
• Isoelectric Point: 10.2518

>NTDB_id=473275 HNQ25_RS16380 WP_244968146.1 3485914..3488139(-) (comA) [Pseudomonas sediminis strain B10D7D]
MRTGMLALALGLLTLRFLPSLPPSWLLLVAVCAALALLFSRLYPLGFFLLGLAWACSSAQSALDDRLAPPLDGRTLWLEG
RVVGLPEVADGVVRFQFEEAHSRRAELPKRMRLAWYGGPPVQGGERWRLAVNLKRPHGLVNPQSFDYEAWLLAQRIGATG
TIKSGQRLSAATGLGSWRDGLRQHLLAVPAFEREGAIAALVLGDGSGLSASDWRLLQHTGTVHLMVISGQHIALLAGFLY
ALVALLARVGAWPRRWPWLPCACALALSGALVYGMLAGFEVPVRRACVMVALVLLWRMRFRHLGAWWPLLLALLVVVLLE
PLASLQPGFWLSFSAVAILALVFGGRLGVWGWWRGLTRAQWTMAIGLLPMMLILGLPVSSSGPLANLVAVPWVGLVVVPL
ALLGTLLLPVPVVGEGLLWLAGGALYLLFELLSVIAAWLPAWLPSNLPLWAWLLAVAGALLLLLPAGVPLRLPGLALLLP
ALLLPTQHLDDGRADVWVLDVGQGLAVLVRTREHSLLYDAGPRFGDFDTGERIVLPSLRAMNLRRLDLMLLSHADNDHAG
GAVAIKAGMPVARVISGEPQRLAEVLGTEACESGRSWQWNDVTFRLWQWQRASSGNQRSCVLQVEAGGERLLLTGDIDIL
AERALMQADFPLASRWLLAPHHGSRTSSSQAFIDAVGAQHVLITRSRHNAFGHPHPQVLARYQAAGVEVHDTALRGALHL
RLGEQVAPRGLRSEPRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=473275 HNQ25_RS16380 WP_244968146.1 3485914..3488139(-) (comA) [Pseudomonas sediminis strain B10D7D]
ATGCGAACAGGGATGTTGGCACTGGCCTTGGGGCTATTGACGCTGCGCTTTCTGCCAAGCCTGCCGCCGAGTTGGTTGTT
GCTGGTGGCGGTCTGCGCCGCTCTGGCTTTGCTGTTCTCGCGCCTCTATCCGCTTGGGTTCTTTTTGCTGGGGTTGGCCT
GGGCCTGCAGCTCGGCGCAATCGGCACTGGATGACCGTCTTGCTCCACCGCTCGATGGCCGTACCCTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCTGAAGTGGCCGATGGTGTCGTGCGCTTCCAGTTCGAAGAGGCGCACTCGCGGCGCGCCGAGCT
GCCGAAAAGAATGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCAAGGCGGCGAGCGCTGGCGTCTGGCGGTCAACCTGA
AGCGGCCGCATGGCCTGGTCAATCCGCAGAGCTTCGACTACGAAGCCTGGTTGCTGGCGCAGCGTATCGGCGCTACGGGC
ACGATCAAGTCTGGCCAGCGGTTATCCGCCGCGACAGGCTTGGGGAGTTGGCGCGACGGTCTGCGTCAGCATCTGCTGGC
GGTGCCGGCCTTTGAGCGAGAGGGCGCCATTGCCGCTCTGGTCCTGGGTGATGGCTCCGGCCTCAGCGCGAGCGACTGGC
GCCTGCTGCAGCACACGGGCACGGTGCATCTGATGGTCATCTCCGGCCAGCATATCGCCCTGCTGGCCGGCTTTCTTTAC
GCACTGGTGGCGTTGCTGGCGAGAGTCGGCGCCTGGCCAAGGCGCTGGCCCTGGTTGCCCTGCGCCTGTGCGCTGGCCCT
GAGTGGGGCTCTGGTCTACGGGATGTTGGCTGGTTTCGAGGTGCCGGTGCGCAGGGCCTGCGTGATGGTTGCGCTGGTGC
TGCTCTGGCGCATGCGCTTTCGTCATCTGGGCGCCTGGTGGCCATTGTTGCTGGCCCTGCTCGTGGTGGTGCTACTCGAG
CCATTGGCGTCCTTGCAACCGGGCTTCTGGCTATCGTTCTCGGCCGTGGCGATTCTCGCGTTGGTGTTCGGTGGCCGGCT
TGGCGTCTGGGGTTGGTGGCGCGGGTTGACGCGTGCGCAGTGGACCATGGCCATTGGTCTGTTGCCGATGATGCTGATTC
TCGGTTTGCCAGTCAGCAGTAGCGGGCCGCTGGCTAATCTGGTCGCCGTGCCCTGGGTGGGGCTGGTTGTCGTACCCCTG
GCCTTGCTGGGCACTCTGCTGCTACCCGTTCCCGTGGTTGGGGAGGGCCTGTTGTGGTTGGCCGGCGGTGCGCTGTATCT
CTTGTTCGAATTGCTCAGCGTGATCGCTGCTTGGTTGCCTGCCTGGTTGCCCAGCAATCTGCCGCTCTGGGCCTGGCTAC
TGGCAGTGGCAGGCGCCTTGTTGCTCCTGCTGCCAGCTGGCGTGCCGTTGCGTCTGCCTGGCCTCGCGCTGTTGTTGCCT
GCCTTATTGTTGCCCACACAGCACCTGGACGATGGCCGTGCCGATGTCTGGGTGCTGGACGTGGGGCAAGGGCTGGCGGT
GCTGGTGCGTACCCGAGAGCACAGCCTGCTGTACGACGCGGGGCCGCGCTTCGGCGATTTCGATACCGGGGAGCGTATCG
TCCTGCCTTCCTTGCGTGCGATGAACCTCAGGCGGCTCGATCTGATGCTGCTCAGCCATGCGGATAACGATCATGCTGGC
GGTGCAGTGGCGATCAAGGCCGGGATGCCGGTGGCCCGGGTCATCAGTGGCGAGCCGCAGCGGCTGGCCGAGGTGCTTGG
CACTGAGGCTTGTGAATCGGGACGAAGCTGGCAATGGAATGACGTGACGTTCAGGCTGTGGCAGTGGCAGCGGGCCAGCT
CCGGTAATCAACGCTCCTGTGTGCTGCAGGTGGAGGCGGGCGGTGAGCGCCTGCTGTTGACTGGTGATATCGACATCCTG
GCCGAACGCGCGCTGATGCAGGCCGACTTTCCCCTGGCCTCGCGTTGGCTGCTGGCACCCCATCACGGCAGTCGAACGTC
ATCCAGTCAGGCTTTTATCGATGCGGTCGGTGCGCAGCATGTGCTGATCACGCGCAGTCGCCACAATGCCTTCGGACATC
CTCACCCGCAGGTGTTGGCGCGCTATCAGGCGGCAGGCGTCGAGGTGCATGACACGGCGTTGCGCGGTGCTCTGCATTTA
CGTCTGGGCGAACAGGTCGCGCCTCGCGGGTTGCGAAGCGAGCCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-677)

• Competence protein (Competence) (200-465)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.527	96.761	0.644
comA	Ralstonia pseudosolanacearum GMI1000	35.99	100	0.402