Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HNQ25_RS16375 Genome accession   NZ_CP060009
Coordinates   3485209..3485841 (-) Length   210 a.a.
NCBI ID   WP_017677620.1    Uniprot ID   A0A1G6U6W3
Organism   Pseudomonas sediminis strain B10D7D     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3480209..3490841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNQ25_RS16345 (HNQ25_16345) murB 3481329..3482348 (-) 1020 WP_179545299.1 UDP-N-acetylmuramate dehydrogenase -
  HNQ25_RS16350 (HNQ25_16350) - 3482345..3482809 (-) 465 WP_179545300.1 low molecular weight protein-tyrosine-phosphatase -
  HNQ25_RS16355 (HNQ25_16355) kdsB 3482809..3483573 (-) 765 WP_179545301.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HNQ25_RS16360 (HNQ25_16360) - 3483574..3483759 (-) 186 WP_013714804.1 Trm112 family protein -
  HNQ25_RS16365 (HNQ25_16365) lpxK 3483782..3484783 (-) 1002 WP_179545302.1 tetraacyldisaccharide 4'-kinase -
  HNQ25_RS16370 (HNQ25_16370) - 3484784..3485212 (-) 429 WP_099526424.1 biopolymer transporter ExbD -
  HNQ25_RS16375 (HNQ25_16375) exbB 3485209..3485841 (-) 633 WP_017677620.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HNQ25_RS16380 (HNQ25_16380) comA 3485914..3488139 (-) 2226 WP_244968146.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HNQ25_RS16385 (HNQ25_16385) - 3488268..3488795 (+) 528 WP_125878644.1 DUF2062 domain-containing protein -
  HNQ25_RS16390 (HNQ25_16390) - 3488833..3490077 (-) 1245 WP_179545303.1 lipoprotein-releasing ABC transporter permease subunit -
  HNQ25_RS16395 (HNQ25_16395) lolD 3490077..3490778 (-) 702 WP_125835823.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22869.13 Da        Isoelectric Point: 7.8833

>NTDB_id=473274 HNQ25_RS16375 WP_017677620.1 3485209..3485841(-) (exbB) [Pseudomonas sediminis strain B10D7D]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREDSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAPMLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=473274 HNQ25_RS16375 WP_017677620.1 3485209..3485841(-) (exbB) [Pseudomonas sediminis strain B10D7D]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGCATCGTCGC
CGAGCGCCTGTGGACCCTGCGGCCCGCCCGCGTCACCCCGGCCAATCTGCTGGCTCAGGTGTGGCGCTGGATCAAGGACA
AGAAACTCAATAACCAGAAGCTCAAGGAACTGCGCGAGGATTCGCCGCTGGGGCAGATTCTCGCTGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCAGCCCGCGTCATCCACGAGCTGGAGCGCTACCT
CAATGCGCTCGGCACCATTGCCGGCATCGCGCCGCTGCTCGGCCTGCTCGGTACCGTACTGGGCATGATCGAAATCTTCA
GCTCCTTCATGGGCTCGGGCATGGCCAACGCGCCGATGCTCGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCGGCC
GGCCTGATGGTGGCGATCCCGGCACTGTTCTTCCATCGCTATCTGCAGCGTCGTGTCGACGAACTGGTAGTCGGCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTTCAGGGTGATCGCGACGTCGACCTGGGTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G6U6W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

89.524

100

0.895