Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   R2846_RS06630 Genome accession   NC_017452
Coordinates   1373231..1373578 (-) Length   115 a.a.
NCBI ID   WP_041174638.1    Uniprot ID   -
Organism   Haemophilus influenzae R2846     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1368231..1378578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2846_RS06610 (R2846_1301) bioB 1368620..1369621 (-) 1002 WP_014550962.1 biotin synthase BioB -
  R2846_RS06615 (R2846_1302) thiQ 1369734..1370381 (-) 648 WP_014550963.1 thiamine ABC transporter ATP-binding protein -
  R2846_RS06620 (R2846_1303) thiP 1370365..1371981 (-) 1617 WP_014550964.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  R2846_RS06625 (R2846_1304) thiB 1371986..1372984 (-) 999 WP_014550965.1 thiamine ABC transporter substrate binding subunit -
  R2846_RS06630 (R2846_1305) comE1/comEA 1373231..1373578 (-) 348 WP_041174638.1 helix-hairpin-helix domain-containing protein Machinery gene
  R2846_RS06635 (R2846_1306) ispH 1373747..1374691 (-) 945 WP_014550967.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R2846_RS06640 (R2846_1307) lspA 1374688..1375203 (-) 516 WP_014550968.1 signal peptidase II -
  R2846_RS06645 (R2846_1308) - 1375273..1376832 (-) 1560 WP_014550969.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12453.34 Da        Isoelectric Point: 8.0084

>NTDB_id=47303 R2846_RS06630 WP_041174638.1 1373231..1373578(-) (comE1/comEA) [Haemophilus influenzae R2846]
MKLMKTLFTSFVLCGSLAAGSTFAEDKVVEQTTQAVVTTQTDSQVAAAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=47303 R2846_RS06630 WP_041174638.1 1373231..1373578(-) (comE1/comEA) [Haemophilus influenzae R2846]
ATGAAATTAATGAAAACATTATTCACTTCGTTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTGCTGAAGACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCAGCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

80.357

97.391

0.783
  comEA/comE1 Glaesserella parasuis strain SC1401

58.879

93.043

0.548
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374

Multiple sequence alignment