Detailed information NTG0472951

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: H4986_RS05005
• Genome accession: NZ_CP059971
• Coordinates: 934003..935415 (-)
• Length: 470 a.a.
• NCBI ID: WP_002855316.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain C34
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 929003..940415

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4986_RS04980 (H4986_04980)	-	929327..930091 (+)	765	WP_002855821.1	TSUP family transporter	-
H4986_RS04985 (H4986_04985)	ctsF	930084..931265 (-)	1182	WP_002868229.1	type II secretion system F family protein	Machinery gene
H4986_RS04990 (H4986_04990)	ctsE	931262..932821 (-)	1560	WP_002858863.1	GspE/PulE family protein	Machinery gene
H4986_RS04995 (H4986_04995)	ctsX	932811..933398 (-)	588	WP_002858864.1	hypothetical protein	Machinery gene
H4986_RS05000 (H4986_05000)	ctsP	933402..934010 (-)	609	WP_002851464.1	ATP-binding protein	Machinery gene
H4986_RS05005 (H4986_05005)	ctsD	934003..935415 (-)	1413	WP_002855316.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
H4986_RS05010 (H4986_05010)	ctsR	935393..935704 (-)	312	WP_002855438.1	hypothetical protein	Machinery gene
H4986_RS05015 (H4986_05015)	nifJ	935728..939147 (-)	3420	Protein_979	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
H4986_RS05020 (H4986_05020)	-	939146..939751 (-)	606	WP_182585086.1	hypothetical protein	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53106.71 Da
• Isoelectric Point: 6.6184

>NTDB_id=472951 H4986_RS05005 WP_002855316.1 934003..935415(-) (ctsD) [Campylobacter jejuni strain C34]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKIPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=472951 H4986_RS05005 WP_002855316.1 934003..935415(-) (ctsD) [Campylobacter jejuni strain C34]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAATTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	99.787	100	0.998