Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H4986_RS05010 Genome accession   NZ_CP059971
Coordinates   935393..935704 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain C34     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 930393..940704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4986_RS04990 (H4986_04990) ctsE 931262..932821 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  H4986_RS04995 (H4986_04995) ctsX 932811..933398 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  H4986_RS05000 (H4986_05000) ctsP 933402..934010 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H4986_RS05005 (H4986_05005) ctsD 934003..935415 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H4986_RS05010 (H4986_05010) ctsR 935393..935704 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  H4986_RS05015 (H4986_05015) nifJ 935728..939147 (-) 3420 Protein_979 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H4986_RS05020 (H4986_05020) - 939146..939751 (-) 606 WP_182585086.1 hypothetical protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=472952 H4986_RS05010 WP_002855438.1 935393..935704(-) (ctsR) [Campylobacter jejuni strain C34]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=472952 H4986_RS05010 WP_002855438.1 935393..935704(-) (ctsR) [Campylobacter jejuni strain C34]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGGCATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1