Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   H4986_RS04985 Genome accession   NZ_CP059971
Coordinates   930084..931265 (-) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni strain C34     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 925084..936265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4986_RS04955 (H4986_04955) - 925628..925969 (+) 342 WP_002784057.1 hypothetical protein -
  H4986_RS04960 (H4986_04960) flgM 926032..926229 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  H4986_RS04965 (H4986_04965) - 926272..926706 (+) 435 WP_002858861.1 flagellar protein FlgN -
  H4986_RS04970 (H4986_04970) flgK 926716..928542 (+) 1827 WP_002858862.1 flagellar hook-associated protein FlgK -
  H4986_RS04975 (H4986_04975) - 928559..929323 (+) 765 WP_002851318.1 TIGR02757 family protein -
  H4986_RS04980 (H4986_04980) - 929327..930091 (+) 765 WP_002855821.1 TSUP family transporter -
  H4986_RS04985 (H4986_04985) ctsF 930084..931265 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  H4986_RS04990 (H4986_04990) ctsE 931262..932821 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  H4986_RS04995 (H4986_04995) ctsX 932811..933398 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  H4986_RS05000 (H4986_05000) ctsP 933402..934010 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H4986_RS05005 (H4986_05005) ctsD 934003..935415 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H4986_RS05010 (H4986_05010) ctsR 935393..935704 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=472947 H4986_RS04985 WP_002868229.1 930084..931265(-) (ctsF) [Campylobacter jejuni strain C34]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=472947 H4986_RS04985 WP_002868229.1 930084..931265(-) (ctsF) [Campylobacter jejuni strain C34]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACACATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTCTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987