Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   I6L01_RS13560 Genome accession   NZ_CP070077
Coordinates   2881448..2882107 (-) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   Q3YXL4
Organism   Escherichia coli strain FDAARGOS_1371     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2876448..2887107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L01_RS13535 (I6L01_13535) - 2877190..2878137 (+) 948 WP_001315018.1 iron-siderophore ABC transporter substrate-binding protein -
  I6L01_RS13540 (I6L01_13540) - 2878134..2879021 (+) 888 WP_000614957.1 MurR/RpiR family transcriptional regulator -
  I6L01_RS13545 (I6L01_13545) ygiN 2879066..2879380 (-) 315 WP_000958598.1 putative quinol monooxygenase -
  I6L01_RS13550 (I6L01_13550) mdaB 2879411..2879992 (-) 582 WP_000072420.1 NADPH:quinone oxidoreductase MdaB -
  I6L01_RS13555 (I6L01_13555) qseC 2880102..2881451 (-) 1350 WP_000673370.1 quorum sensing histidine kinase QseC -
  I6L01_RS13560 (I6L01_13560) ciaR 2881448..2882107 (-) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  I6L01_RS13565 (I6L01_13565) ygiW 2882259..2882651 (+) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  I6L01_RS13570 (I6L01_13570) ygiV 2882704..2883186 (+) 483 WP_000183504.1 GyrI-like domain-containing protein -
  I6L01_RS13575 (I6L01_13575) parC 2883732..2885990 (+) 2259 WP_033550964.1 DNA topoisomerase IV subunit A -
  I6L01_RS13580 (I6L01_13580) plsC 2886224..2886961 (+) 738 WP_000965711.1 1-acylglycerol-3-phosphate O-acyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24687.63 Da        Isoelectric Point: 6.9850

>NTDB_id=472552 I6L01_RS13560 WP_001221493.1 2881448..2882107(-) (ciaR) [Escherichia coli strain FDAARGOS_1371]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=472552 I6L01_RS13560 WP_001221493.1 2881448..2882107(-) (ciaR) [Escherichia coli strain FDAARGOS_1371]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTATATAGTGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGTTAGCGGAACGTGTAGAGGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAACTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACTCTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGCAGTGATTTTATTCGTACCGTTCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365